RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	ENA2	Q01896	1091 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	YKR011C	Q02209	353 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	NCE101	Q02820	53 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	FMP42	Q04991	504 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	REX3	Q12090	404 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	HER1	Q12276	1246 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	ENA5	Q12691	1091 aa		12.95	□□□□□ -0.34
DEP1	YAL013W	DET1	Q99288	334 aa	Known RBP	12.95	□□□□□ -0.34
DEP1	YAL013W	GLK1	P17709	500 aa	Known RBP	12.94	□□□□□ -0.34
DEP1	YAL013W	IFA38	P38286	347 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	GCN20	P43535	752 aa	Known RBP	12.94	□□□□□ -0.34
DEP1	YAL013W	ASK10	P48361	1146 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	MPA43	P53583	542 aa	Predicted RBP	12.94	□□□□□ -0.34
DEP1	YAL013W	ASI1	P54074	624 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	ELP6	Q04868	273 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	YOL073C	Q08232	322 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	BRX1	Q08235	291 aa	Known RBP	12.94	□□□□□ -0.34
DEP1	YAL013W	TPO4	Q12256	659 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	PNS1	Q12412	539 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	APC2	Q12440	853 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	PSF1	Q12488	208 aa		12.94	□□□□□ -0.34
DEP1	YAL013W	DPM1	P14020	267 aa	Known RBP	12.93	□□□□□ -0.34
DEP1	YAL013W	SEC61	P32915	480 aa		12.93	□□□□□ -0.34
DEP1	YAL013W	DHR2	P36009	735 aa	Predicted RBP	12.93	□□□□□ -0.34
DEP1	YAL013W	IRC5	P43610	853 aa		12.93	□□□□□ -0.34
DEP1	YAL013W	YGL235W	P53071	178 aa		12.93	□□□□□ -0.34
DEP1	YAL013W	COS1	P53822	381 aa		12.93	□□□□□ -0.34
DEP1	YAL013W	NTG2	Q08214	380 aa		12.93	□□□□□ -0.34
DEP1	YAL013W	GSH2	Q08220	491 aa		12.93	□□□□□ -0.34
DEP1	YAL013W	FMP40	Q08968	688 aa	Predicted RBP	12.93	□□□□□ -0.34
DEP1	YAL013W	COX1	P00401	534 aa		12.92	□□□□□ -0.34
DEP1	YAL013W	AI4	P03878	556 aa		12.92	□□□□□ -0.34
DEP1	YAL013W	YSF3	P0C074	85 aa	Predicted RBP	12.92	□□□□□ -0.34
DEP1	YAL013W	SNF6	P18888	332 aa		12.92	□□□□□ -0.34
DEP1	YAL013W	SNU114	P36048	1008 aa	Known RBP	12.92	□□□□□ -0.34
DEP1	YAL013W	RRP4	P38792	359 aa	Known RBP	12.92	□□□□□ -0.34
DEP1	YAL013W	TRS23	Q03784	219 aa		12.92	□□□□□ -0.34
DEP1	YAL013W	CDA2	Q06703	312 aa		12.92	□□□□□ -0.34
DEP1	YAL013W	FMP45	Q07651	309 aa		12.92	□□□□□ -0.34
DEP1	YAL013W	IDP1	P21954	428 aa	Known RBP	12.91	□□□□□ -0.34
DEP1	YAL013W	LYP1	P32487	611 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	ORC2	P32833	620 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	YPT7	P32939	208 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	ARC19	P33204	171 aa	Known RBP	12.91	□□□□□ -0.34
DEP1	YAL013W	LST4	P34239	828 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	ARN2	P38724	620 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	YIL067C	P40514	678 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	YJR141W	P47172	347 aa	Predicted RBP	12.91	□□□□□ -0.34
DEP1	YAL013W	SPC3	Q12133	184 aa		12.91	□□□□□ -0.34
DEP1	YAL013W	DPB2	P24482	689 aa	Predicted RBP	12.9	□□□□□ -0.34
DEP1	YAL013W	YKL077W	P36081	392 aa		12.9	□□□□□ -0.34
DEP1	YAL013W	MCM7	P38132	845 aa		12.9	□□□□□ -0.34
DEP1	YAL013W	ALG3	P38179	458 aa		12.9	□□□□□ -0.34
DEP1	YAL013W	EXO84	P38261	753 aa		12.9	□□□□□ -0.34
DEP1	YAL013W	NTA1	P40354	457 aa		12.9	□□□□□ -0.34
DEP1	YAL013W	RBL2	P48606	106 aa	Known RBP	12.9	□□□□□ -0.34
DEP1	YAL013W	SEH1	P53011	349 aa	Known RBP	12.9	□□□□□ -0.34
DEP1	YAL013W	ERB1	Q04660	807 aa	Known RBP	12.9	□□□□□ -0.34
DEP1	YAL013W	NOP12	Q08208	459 aa	Known RBP	12.9	□□□□□ -0.34
DEP1	YAL013W	PAR32	Q12515	295 aa	Known RBP	12.9	□□□□□ -0.34
DEP1	YAL013W	DFG16	Q99234	619 aa		12.9	□□□□□ -0.34
DEP1	YAL013W	CDC26	P14724	124 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	BAP3	P41815	604 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	MDV1	P47025	714 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	YLR460C	P54007	376 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	OST6	Q03723	332 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	RRP17	Q04031	235 aa	Predicted RBP	12.89	□□□□□ -0.35
DEP1	YAL013W	SYO1	Q07395	620 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	UIP4	Q08926	304 aa		12.89	□□□□□ -0.35
DEP1	YAL013W	TEC1	P18412	486 aa		12.88	□□□□□ -0.35
DEP1	YAL013W	KGD1	P20967	1014 aa	Known RBP	12.88	□□□□□ -0.35
DEP1	YAL013W	UBS1	P38290	277 aa		12.88	□□□□□ -0.35
DEP1	YAL013W	NQM1	P53228	333 aa	Predicted RBP	12.88	□□□□□ -0.35
DEP1	YAL013W	GAL83	Q04739	417 aa		12.88	□□□□□ -0.35
DEP1	YAL013W	RSA3	Q05942	220 aa	Known RBP	12.88	□□□□□ -0.35
DEP1	YAL013W	NPC2	Q12408	173 aa		12.88	□□□□□ -0.35
DEP1	YAL013W	FLP1	P03870	423 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	DAT1	P13483	248 aa	Known RBP	12.87	□□□□□ -0.35
DEP1	YAL013W	ERD1	P16151	362 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	ERD2	P18414	219 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	NAR1	P23503	491 aa	Known RBP	12.87	□□□□□ -0.35
DEP1	YAL013W	RTC2	P38279	296 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	ZRG8	P40021	1076 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	SNO3	P43544	222 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	IRC7	P43623	340 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	EFM3	P47163	339 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	YGL101W	P53144	215 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	NUP49	Q02199	472 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	SRL4	Q03085	281 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	NEJ1	Q06148	342 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	YPR127W	Q06494	345 aa		12.87	□□□□□ -0.35
DEP1	YAL013W	RPL17A	P05740	184 aa	Known RBP	12.86	□□□□□ -0.35
DEP1	YAL013W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	12.86	□□□□□ -0.35	not detected
DEP1	YAL013W	NDC1	P32500	655 aa		12.86	□□□□□ -0.35
DEP1	YAL013W	EMP70	P32802	667 aa		12.86	□□□□□ -0.35
DEP1	YAL013W	TIM12	P32830	109 aa		12.86	□□□□□ -0.35
DEP1	YAL013W	UTP11	P34247	250 aa	Predicted RBP	12.86	□□□□□ -0.35
DEP1	YAL013W	YPK3	P38070	525 aa		12.86	□□□□□ -0.35
DEP1	YAL013W	NSG1	P38837	291 aa		12.86	□□□□□ -0.35
DEP1	YAL013W	DDI1	P40087	428 aa		12.86	□□□□□ -0.35

Retrieved 100 of 5,963 RNA–protein pairs in 77.2 ms