RNA–Protein interactions for RNA: YPR001W

CIT3, Transcript of Dual specificity mitochondrial citrate and methylcitrate synthase, yeast

Gene CIT3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CIT3	YPR001W	ORC5	P50874	479 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	PCP1	P53259	346 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	GPI1	P53306	609 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	RHO4	Q00246	291 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	CDA2	Q06703	312 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	SRO7	Q12038	1033 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	NCB2	Q92317	146 aa		6.09	□□□□□ -1.44
CIT3	YPR001W	RAD9	P14737	1309 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	KIN3	P22209	435 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	MAK32	P23060	363 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	SNC1	P31109	117 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	ACP1	P32463	125 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	EXO1	P39875	702 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	COA1	P40452	197 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	AIM24	P47127	394 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	TOS2	P50078	622 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	PKP2	P53170	491 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	SOL4	P53315	255 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	ALG11	P53954	548 aa	Known RBP	6.08	□□□□□ -1.44
CIT3	YPR001W	KRE28	Q04431	385 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	SEY1	Q99287	776 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	YOR338W	Q99326	363 aa		6.08	□□□□□ -1.44
CIT3	YPR001W	TPK3	P05986	398 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	MATALPHA2	P0CY08	210 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	HMLALPHA2	P0CY09	210 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	MRP1	P10662	321 aa	Known RBP	6.07	□□□□□ -1.44
CIT3	YPR001W	RPB8	P20436	146 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	UTR1	P21373	530 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	PRP18	P33411	251 aa	Predicted RBP	6.07	□□□□□ -1.44
CIT3	YPR001W	RIB1	P38066	345 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	YBR056W	P38081	501 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	MTW1	P39731	289 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	ISC1	P40015	477 aa	Known RBP	6.07	□□□□□ -1.44
CIT3	YPR001W	DSN1	P40568	576 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	AGP3	P43548	558 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	ASN1	P49089	572 aa	Known RBP	6.07	□□□□□ -1.44
CIT3	YPR001W	SEH1	P53011	349 aa	Known RBP	6.07	□□□□□ -1.44
CIT3	YPR001W	NUP116	Q02630	1113 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	SPO77	Q06134	477 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	AIM39	Q08223	395 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	DAP1	Q12091	152 aa		6.07	□□□□□ -1.44
CIT3	YPR001W	BI2	P03873	423 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	HEM2	P05373	342 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	RPL27A	P0C2H6	136 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	RPL27B	P0C2H7	136 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	STE18	P18852	110 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	ARF2	P19146	181 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	HRR25	P29295	494 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	VMA6	P32366	345 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	6.06	□□□□□ -1.44	not detected
CIT3	YPR001W	TOA2	P32774	122 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	GDH2	P33327	1092 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	YKL097C	P34245	136 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	KDX1	P36005	433 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	FHL1	P39521	936 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	SAD1	P43589	448 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	MKC7	P53379	596 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	TRM112	P53738	135 aa	Predicted RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	SSK1	Q07084	712 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	YPQ1	Q12010	308 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	YRA1	Q12159	226 aa	Known RBP	6.06	□□□□□ -1.44
CIT3	YPR001W	RKM5	Q12367	367 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	ERP3	Q12403	225 aa		6.06	□□□□□ -1.44
CIT3	YPR001W	THP2	O13539	261 aa	Known RBP	6.05	□□□□□ -1.44
CIT3	YPR001W	RAD1	P06777	1100 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	MRPL8	P22353	238 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	BUB3	P26449	341 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	ERG9	P29704	444 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	ACB1	P31787	87 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	FLO10	P36170	1169 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	RIM2	P38127	377 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	AIM3	P38266	947 aa	Known RBP	6.05	□□□□□ -1.44
CIT3	YPR001W	PHO90	P39535	881 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	YRB1	P41920	201 aa	Known RBP	6.05	□□□□□ -1.44
CIT3	YPR001W	PHB2	P50085	310 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	STB4	P50104	949 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	OKP1	P53298	406 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	IVY1	Q04934	453 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	YDL218W	Q07629	317 aa		6.05	□□□□□ -1.44
CIT3	YPR001W	SKI7	Q08491	747 aa	Predicted RBP	6.05	□□□□□ -1.44
CIT3	YPR001W	ATP1	P07251	545 aa	Known RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	HEM1	P09950	548 aa	Predicted RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	HPR1	P17629	752 aa	Known RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	ATP7	P30902	174 aa		6.04	□□□□□ -1.44
CIT3	YPR001W	SKT5	P34226	696 aa		6.04	□□□□□ -1.44
CIT3	YPR001W	SWD2	P36104	329 aa	Predicted RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	SMF2	P38778	549 aa		6.04	□□□□□ -1.44
CIT3	YPR001W	RTC3	P38804	111 aa	Predicted RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	IMD3	P50095	523 aa	Known RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	PXR1	P53335	271 aa	Predicted RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	ARP10	Q04549	284 aa		6.04	□□□□□ -1.44
CIT3	YPR001W	SWF1	Q04629	336 aa		6.04	□□□□□ -1.44
CIT3	YPR001W	YMR034C	Q05131	434 aa	Predicted RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	DCR2	Q05924	578 aa		6.04	□□□□□ -1.44
CIT3	YPR001W	PBP4	Q07362	185 aa	Known RBP	6.04	□□□□□ -1.44
CIT3	YPR001W	CBF1	P17106	351 aa		6.03	□□□□□ -1.44
CIT3	YPR001W	SAT4	P25333	603 aa	Known RBP	6.03	□□□□□ -1.44
CIT3	YPR001W	YCR007C	P25354	239 aa		6.03	□□□□□ -1.44
CIT3	YPR001W	RPS2	P25443	254 aa	Known RBP	6.03	□□□□□ -1.44
CIT3	YPR001W	PEX3	P28795	441 aa		6.03	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms