RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	HMX1	P32339	317 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	CAF4	P36130	643 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	KAE1	P36132	386 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	YBR071W	P38243	211 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	RFC3	P38629	340 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	IMD2	P38697	523 aa	Known RBP	4.66	□□□□□ -1.66
NUP116	YMR047C	SEC31	P38968	1273 aa	Known RBP	4.66	□□□□□ -1.66
NUP116	YMR047C	MSS4	P38994	779 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	CIS3	P47001	227 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	ROM1	P53046	1155 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	NMA111	P53920	997 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	DID2	P69771	204 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	SHR3	Q02774	210 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	YDC1	Q02896	317 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	STP3	Q05937	343 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	DGK1	Q12382	290 aa		4.66	□□□□□ -1.66
NUP116	YMR047C	MET17	P06106	444 aa		4.65	□□□□□ -1.66
NUP116	YMR047C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.66	not detected
NUP116	YMR047C	BUB3	P26449	341 aa		4.65	□□□□□ -1.66
NUP116	YMR047C	GDH2	P33327	1092 aa	Known RBP	4.65	□□□□□ -1.66
NUP116	YMR047C	CCT2	P39076	527 aa	Known RBP	4.65	□□□□□ -1.66
NUP116	YMR047C	SGF73	P53165	657 aa		4.65	□□□□□ -1.66
NUP116	YMR047C	YMR279C	Q03263	540 aa		4.65	□□□□□ -1.66
NUP116	YMR047C	ROT1	Q03691	256 aa		4.65	□□□□□ -1.66
NUP116	YMR047C	MLH3	Q12083	715 aa		4.65	□□□□□ -1.66
NUP116	YMR047C	CDC20	P26309	610 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	CWP1	P28319	239 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	PMT2	P31382	759 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	MKK2	P32491	506 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	HBS1	P32769	611 aa	Known RBP	4.65	□□□□□ -1.67
NUP116	YMR047C	SKG1	P36169	355 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	LTP1	P40347	161 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	MRPS18	P42847	217 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	ALY2	P47029	1046 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	LSM8	P47093	109 aa	Known RBP	4.65	□□□□□ -1.67
NUP116	YMR047C	YGR026W	P53217	278 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	CSL4	P53859	292 aa	Predicted RBP	4.65	□□□□□ -1.67
NUP116	YMR047C	YMR027W	Q04371	470 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	BOP2	Q06150	570 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	LUC7	Q07508	261 aa	Predicted RBP	4.65	□□□□□ -1.67
NUP116	YMR047C	RAX1	Q08760	435 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	TSC13	Q99190	310 aa		4.65	□□□□□ -1.67
NUP116	YMR047C	RPN13	O13563	156 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	LEU4	P06208	619 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	MET2	P08465	486 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	SEC62	P21825	274 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	SSE2	P32590	693 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	SKN1	P33336	771 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	YKR015C	P36111	568 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	EDS1	P38073	919 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	YHL008C	P38750	627 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	OSH7	P38755	437 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	PCL6	P40038	420 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	TES1	P41903	349 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	YJR111C	P47148	283 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	HXT16	P47185	567 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	HXT15	P54854	567 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	FAR10	Q06001	478 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	UTP21	Q06078	939 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	NSI1	Q12457	570 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	FPS1	P23900	669 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	DAL3	P32459	195 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	RPD3	P32561	433 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	PRP18	P33411	251 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	AST1	P35183	429 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	UTP30	P36144	274 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	VRP1	P37370	817 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	CDS1	P38221	457 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	YBR138C	P38277	524 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	NTC20	P38302	140 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	GAT1	P43574	510 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	BUD32	P53323	261 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	SNF12	P53628	566 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	YML131W	Q03102	365 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	SWF1	Q04629	336 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	YLR283W	Q05867	314 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	PFA4	Q12006	378 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	RUP1	Q12242	671 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	ICT1	Q12385	394 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	RPL6B	P05739	176 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	YAK1	P14680	807 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	CNB1	P25296	175 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	CTS1	P29029	562 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	TRM7	P38238	310 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	REF2	P42073	533 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	CSN12	P47130	423 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	JHD2	P47156	728 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	GTO1	P48239	356 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	PAC10	P48363	199 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	SHY1	P53266	389 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	KTR5	P53966	522 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	URC2	Q04411	772 aa		4.64	□□□□□ -1.67
NUP116	YMR047C	YMR034C	Q05131	434 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	RPN5	Q12250	445 aa	Known RBP	4.64	□□□□□ -1.67
NUP116	YMR047C	PDC5	P16467	563 aa	Known RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	HRR25	P29295	494 aa	Known RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	MRPL9	P31334	269 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	SUI1	P32911	108 aa	Known RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	SEC61	P32915	480 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	YKR078W	P36158	585 aa	Known RBP	4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms