RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W RHB1P25378 209 aa1.14□□□□□ -2.23
CDC39YCR093W DAL80P26343 269 aa1.14□□□□□ -2.23
CDC39YCR093W SMI1P32566 505 aa1.14□□□□□ -2.23
CDC39YCR093W GCS1P35197 352 aa1.14□□□□□ -2.23
CDC39YCR093W STB6P36085 766 aa1.14□□□□□ -2.23
CDC39YCR093W POP2P39008 433 aa1.14□□□□□ -2.23
CDC39YCR093W LYS20P48570 428 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W PCP1P53259 346 aa1.14□□□□□ -2.23
CDC39YCR093W TSR1Q07381 788 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W PAR32Q12515 295 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W RPS0AP32905 252 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W MTR2P34232 184 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W PXL1P36166 706 aa1.14□□□□□ -2.23
CDC39YCR093W SEC27P41811 889 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W ODC1Q03028 310 aa1.14□□□□□ -2.23
CDC39YCR093W AIM32Q04689 311 aa1.14□□□□□ -2.23
CDC39YCR093W PFA4Q12006 378 aa1.14□□□□□ -2.23
CDC39YCR093W RRP42Q12277 265 aaPredicted RBP1.14□□□□□ -2.23
CDC39YCR093W COR1P07256 457 aa1.13□□□□□ -2.23
CDC39YCR093W PCT1P13259 424 aa1.13□□□□□ -2.23
CDC39YCR093W MDM10P18409 493 aa1.13□□□□□ -2.23
CDC39YCR093W PRD1P25375 712 aa1.13□□□□□ -2.23
CDC39YCR093W MSP1P28737 362 aa1.13□□□□□ -2.23
CDC39YCR093W ACH1P32316 526 aa1.13□□□□□ -2.23
CDC39YCR093W YBL059WP34224 193 aa1.13□□□□□ -2.23
CDC39YCR093W MBB1P39534 108 aa1.13□□□□□ -2.23
CDC39YCR093W YJR030CP47101 745 aa1.13□□□□□ -2.23
CDC39YCR093W UPF3P48412 387 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W ASN2P49090 572 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YGL114WP53134 725 aa1.13□□□□□ -2.23
CDC39YCR093W HCH1P53834 153 aa1.13□□□□□ -2.23
CDC39YCR093W GRX6Q12438 231 aa1.13□□□□□ -2.23
CDC39YCR093W SET6Q12529 373 aa1.13□□□□□ -2.23
CDC39YCR093W RAD61Q99359 647 aa1.13□□□□□ -2.23
CDC39YCR093W POM152P39685 1337 aa1.13□□□□□ -2.23
CDC39YCR093W BNR1P40450 1375 aa1.13□□□□□ -2.23
CDC39YCR093W RNR2P09938 399 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W KRE2P27809 442 aa1.13□□□□□ -2.23
CDC39YCR093W ZTA1P38230 334 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W NDT80P38830 627 aa1.13□□□□□ -2.23
CDC39YCR093W HMS2P47175 358 aa1.13□□□□□ -2.23
CDC39YCR093W TIM10P87108 93 aa1.13□□□□□ -2.23
CDC39YCR093W YLL032CQ07834 825 aaKnown RBP RIP-Chip data1.13□□□□□ -2.23not detected
CDC39YCR093W SKI7Q08491 747 aaPredicted RBP1.13□□□□□ -2.23
CDC39YCR093W SPE3Q12074 293 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W RTC5Q12108 567 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YLR112WQ12130 139 aa1.13□□□□□ -2.23
CDC39YCR093W ATG34Q12292 412 aa1.13□□□□□ -2.23
CDC39YCR093W PDH1Q12428 516 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W MRP13P12686 339 aa1.13□□□□□ -2.23
CDC39YCR093W ACB1P31787 87 aa1.13□□□□□ -2.23
CDC39YCR093W HIR2P32480 875 aa1.13□□□□□ -2.23
CDC39YCR093W MUD1P32605 298 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W RML2P32611 393 aa1.13□□□□□ -2.23
CDC39YCR093W NRP1P32770 719 aaKnown RBP RIP-Chip data1.13□□□□□ -2.23not detected
CDC39YCR093W MRPL4P36517 319 aa1.13□□□□□ -2.23
CDC39YCR093W YCR041WP37265 110 aa1.13□□□□□ -2.23
CDC39YCR093W YTP1P53584 459 aa1.13□□□□□ -2.23
CDC39YCR093W RPN9Q04062 393 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W ROY1Q04847 553 aa1.13□□□□□ -2.23
CDC39YCR093W PET111P08468 800 aa1.13□□□□□ -2.23
CDC39YCR093W THR4P16120 514 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W VMA5P31412 392 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W CYS4P32582 507 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W SIP2P34164 415 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W CAJ1P39101 391 aa1.13□□□□□ -2.23
CDC39YCR093W SHO1P40073 367 aa1.13□□□□□ -2.23
CDC39YCR093W FAU1P40099 211 aa1.13□□□□□ -2.23
CDC39YCR093W YMR147WP40218 223 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W AIM24P47127 394 aa1.13□□□□□ -2.23
CDC39YCR093W APT1P49435 187 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YGL039WP53183 348 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W CLD1P53264 445 aa1.13□□□□□ -2.23
CDC39YCR093W RTT102P53330 157 aa1.13□□□□□ -2.23
CDC39YCR093W ERB1Q04660 807 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YMR310CQ04867 317 aaPredicted RBP1.13□□□□□ -2.23
CDC39YCR093W PEX27Q08580 376 aa1.13□□□□□ -2.23
CDC39YCR093W SRL1Q08673 210 aa1.13□□□□□ -2.23
CDC39YCR093W AHC1Q12433 566 aa1.13□□□□□ -2.23
CDC39YCR093W DST1P07273 309 aa1.13□□□□□ -2.23
CDC39YCR093W RNA1P11745 407 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YCL068CP25593 260 aa1.13□□□□□ -2.23
CDC39YCR093W POP5P28005 173 aa1.13□□□□□ -2.23
CDC39YCR093W DEP1P31385 405 aa1.13□□□□□ -2.23
CDC39YCR093W ISC1P40015 477 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W MRX5P47007 382 aa1.13□□□□□ -2.23
CDC39YCR093W TRF5P48561 642 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W ARK1P53974 638 aa1.13□□□□□ -2.23
CDC39YCR093W NUP100Q02629 959 aa1.13□□□□□ -2.23
CDC39YCR093W PRP42Q03776 544 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YMR027WQ04371 470 aa1.13□□□□□ -2.23
CDC39YCR093W RBS1Q05672 457 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W CUE5Q08412 411 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W SAM4Q08985 325 aaKnown RBP1.13□□□□□ -2.23
CDC39YCR093W YOP1Q12402 180 aa1.13□□□□□ -2.23
CDC39YCR093W GCD2P12754 651 aaPredicted RBP1.12□□□□□ -2.23
CDC39YCR093W PPH22P23595 377 aa1.12□□□□□ -2.23
CDC39YCR093W PET18P25362 215 aa1.12□□□□□ -2.23
CDC39YCR093W MSK1P32048 576 aa1.12□□□□□ -2.23
CDC39YCR093W YKR015CP36111 568 aa1.12□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 23.4 ms