RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W REV1P12689 985 aa4.35□□□□□ -1.71
VPS28YPL065W SAM2P19358 384 aaKnown RBP4.35□□□□□ -1.71
VPS28YPL065W LTV1P34078 463 aa4.35□□□□□ -1.71
VPS28YPL065W RRN10P38204 145 aa4.35□□□□□ -1.71
VPS28YPL065W VHS2P40463 436 aa4.35□□□□□ -1.71
VPS28YPL065W HMS2P47175 358 aa4.35□□□□□ -1.71
VPS28YPL065W TOM22P49334 152 aa4.35□□□□□ -1.71
VPS28YPL065W FRE4P53746 719 aa4.35□□□□□ -1.71
VPS28YPL065W ERO1Q03103 563 aa4.35□□□□□ -1.71
VPS28YPL065W AEP3Q12089 606 aa4.35□□□□□ -1.71
VPS28YPL065W ORT1Q12375 292 aa4.35□□□□□ -1.71
VPS28YPL065W MTR10Q99189 972 aa4.35□□□□□ -1.71
VPS28YPL065W CHS1P08004 1131 aa4.34□□□□□ -1.71
VPS28YPL065W ITR1P30605 584 aa4.34□□□□□ -1.71
VPS28YPL065W SMY1P32364 656 aaKnown RBP4.34□□□□□ -1.71
VPS28YPL065W HEL1P36113 551 aa4.34□□□□□ -1.71
VPS28YPL065W ZTA1P38230 334 aaKnown RBP4.34□□□□□ -1.71
VPS28YPL065W PCA1P38360 1216 aa4.34□□□□□ -1.71
VPS28YPL065W LYS1P38998 373 aaRIP-Chip data4.34□□□□□ -1.71not detected
VPS28YPL065W YJL055WP47044 245 aa4.34□□□□□ -1.71
VPS28YPL065W PHB2P50085 310 aa4.34□□□□□ -1.71
VPS28YPL065W VPS9P54787 451 aa4.34□□□□□ -1.71
VPS28YPL065W GIP3Q03016 1276 aa4.34□□□□□ -1.71
VPS28YPL065W SXM1Q04175 944 aaKnown RBP4.34□□□□□ -1.71
VPS28YPL065W MED2Q12124 431 aa4.34□□□□□ -1.71
VPS28YPL065W CTR86P25355 563 aa4.33□□□□□ -1.72
VPS28YPL065W TIP1P27654 210 aaPredicted RBP4.33□□□□□ -1.72
VPS28YPL065W CRM1P30822 1084 aaKnown RBP4.33□□□□□ -1.72
VPS28YPL065W MDL1P33310 695 aa4.33□□□□□ -1.72
VPS28YPL065W ASC1P38011 319 aaKnown RBP4.33□□□□□ -1.72
VPS28YPL065W AVT5P38176 459 aa4.33□□□□□ -1.72
VPS28YPL065W YBP1P38315 674 aa4.33□□□□□ -1.72
VPS28YPL065W FAD1P38913 306 aa4.33□□□□□ -1.72
VPS28YPL065W MKT1P40850 830 aaKnown RBP4.33□□□□□ -1.72
VPS28YPL065W YLR456WQ06199 204 aa4.33□□□□□ -1.72
VPS28YPL065W REX4Q08237 289 aa4.33□□□□□ -1.72
VPS28YPL065W YPL199CQ08954 240 aa4.33□□□□□ -1.72
VPS28YPL065W RPN5Q12250 445 aaKnown RBP4.33□□□□□ -1.72
VPS28YPL065W ADE4P04046 510 aaKnown RBP4.32□□□□□ -1.72
VPS28YPL065W CPR1P14832 162 aaKnown RBP4.32□□□□□ -1.72
VPS28YPL065W RRP7P25368 297 aaPredicted RBP4.32□□□□□ -1.72
VPS28YPL065W GDI1P39958 451 aaKnown RBP4.32□□□□□ -1.72
VPS28YPL065W JEM1P40358 645 aa4.32□□□□□ -1.72
VPS28YPL065W SHE10P53075 577 aa4.32□□□□□ -1.72
VPS28YPL065W CAF40P53829 373 aa4.32□□□□□ -1.72
VPS28YPL065W MRP51Q02950 344 aa4.32□□□□□ -1.72
VPS28YPL065W TIM18Q08749 192 aa4.32□□□□□ -1.72
VPS28YPL065W MUM3Q08750 479 aa4.32□□□□□ -1.72
VPS28YPL065W PMR1P13586 950 aa4.31□□□□□ -1.72
VPS28YPL065W SWH1P35845 1188 aa4.31□□□□□ -1.72
VPS28YPL065W MST28P39552 234 aa4.31□□□□□ -1.72
VPS28YPL065W YAL037WP39728 267 aa4.31□□□□□ -1.72
VPS28YPL065W OST1P41543 476 aaKnown RBP4.31□□□□□ -1.72
VPS28YPL065W LAM5P43560 674 aa4.31□□□□□ -1.72
VPS28YPL065W GPI15P53961 229 aa4.31□□□□□ -1.72
VPS28YPL065W TAF12Q03761 539 aa4.31□□□□□ -1.72
VPS28YPL065W SNT309Q06091 175 aaPredicted RBP4.31□□□□□ -1.72
VPS28YPL065W THP3Q12049 470 aaKnown RBP4.31□□□□□ -1.72
VPS28YPL065W YLL056CQ12177 298 aa4.31□□□□□ -1.72
VPS28YPL065W PKH2Q12236 1081 aaKnown RBP4.31□□□□□ -1.72
VPS28YPL065W RPL1AP0CX43 217 aaKnown RBP4.3□□□□□ -1.72
VPS28YPL065W RPL1BP0CX44 217 aaKnown RBP4.3□□□□□ -1.72
VPS28YPL065W LSB5P25369 354 aa4.3□□□□□ -1.72
VPS28YPL065W RIM1P32445 135 aaKnown RBP4.3□□□□□ -1.72
VPS28YPL065W MRP4P32902 394 aa4.3□□□□□ -1.72
VPS28YPL065W NAT2P37293 288 aa4.3□□□□□ -1.72
VPS28YPL065W YNR048WP53740 393 aa4.3□□□□□ -1.72
VPS28YPL065W BOR1P53838 576 aa4.3□□□□□ -1.72
VPS28YPL065W GOR1P53839 350 aa4.3□□□□□ -1.72
VPS28YPL065W RCF1Q03713 159 aa4.3□□□□□ -1.72
VPS28YPL065W SKI7Q08491 747 aaPredicted RBP4.3□□□□□ -1.72
VPS28YPL065W RMD5Q12508 421 aa4.3□□□□□ -1.72
VPS28YPL065W TEF1P02994 458 aaKnown RBP4.29□□□□□ -1.72
VPS28YPL065W ARG4P04076 463 aaPredicted RBP4.29□□□□□ -1.72
VPS28YPL065W IMA3P0CW40 589 aa4.29□□□□□ -1.72
VPS28YPL065W IMA4P0CW41 589 aa4.29□□□□□ -1.72
VPS28YPL065W DPH2P32461 534 aa4.29□□□□□ -1.72
VPS28YPL065W NIP1P32497 812 aaKnown RBP4.29□□□□□ -1.72
VPS28YPL065W BLI1P35727 113 aa4.29□□□□□ -1.72
VPS28YPL065W SEC28P40509 296 aaKnown RBP4.29□□□□□ -1.72
VPS28YPL065W IDP2P41939 412 aa4.29□□□□□ -1.72
VPS28YPL065W MSO1P53604 210 aaKnown RBP4.29□□□□□ -1.72
VPS28YPL065W RSN1Q03516 953 aa4.29□□□□□ -1.72
VPS28YPL065W BET5Q03630 159 aa4.29□□□□□ -1.72
VPS28YPL065W IMA2Q08295 589 aa4.29□□□□□ -1.72
VPS28YPL065W SGT1Q08446 395 aa4.29□□□□□ -1.72
VPS28YPL065W BUG1Q12191 341 aa4.29□□□□□ -1.72
VPS28YPL065W YCL021W-AQ96VH3 125 aa4.29□□□□□ -1.72
VPS28YPL065W HSP82P02829 709 aaKnown RBP4.28□□□□□ -1.72
VPS28YPL065W SPO12P17123 173 aa4.28□□□□□ -1.72
VPS28YPL065W RIB5P38145 238 aa4.28□□□□□ -1.72
VPS28YPL065W RXT2P38255 430 aa4.28□□□□□ -1.72
VPS28YPL065W SSN8P47821 323 aa4.28□□□□□ -1.72
VPS28YPL065W YGL242CP53066 181 aa4.28□□□□□ -1.72
VPS28YPL065W RHO5P53879 331 aaKnown RBP4.28□□□□□ -1.72
VPS28YPL065W HNT3Q08702 217 aa4.28□□□□□ -1.72
VPS28YPL065W RAD61Q99359 647 aa4.28□□□□□ -1.72
VPS28YPL065W NAT1P12945 854 aaKnown RBP4.27□□□□□ -1.73
VPS28YPL065W SLY1P22213 666 aa4.27□□□□□ -1.73
VPS28YPL065W MIX23P38162 196 aa4.27□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms