RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W SGN1P40561 250 aaKnown RBP RIP-Chip data3.19□□□□□ -1.9not detected
UBP8YMR223W INA22P40576 216 aa3.19□□□□□ -1.9
UBP8YMR223W GIM3P53900 129 aa3.19□□□□□ -1.9
UBP8YMR223W SHR3Q02774 210 aa3.19□□□□□ -1.9
UBP8YMR223W RRN11Q04712 507 aa3.19□□□□□ -1.9
UBP8YMR223W MRPL51Q06090 140 aaPredicted RBP3.19□□□□□ -1.9
UBP8YMR223W VPS74Q06385 345 aa3.19□□□□□ -1.9
UBP8YMR223W MHR1Q06630 226 aa3.19□□□□□ -1.9
UBP8YMR223W LUC7Q07508 261 aaPredicted RBP3.19□□□□□ -1.9
UBP8YMR223W RTT109Q07794 436 aa3.19□□□□□ -1.9
UBP8YMR223W RCN2Q12044 265 aa3.19□□□□□ -1.9
UBP8YMR223W BUG1Q12191 341 aa3.19□□□□□ -1.9
UBP8YMR223W AFI1Q99222 893 aa3.19□□□□□ -1.9
UBP8YMR223W IKI3Q06706 1349 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W TDH1P00360 332 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W PWP1P21304 576 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W YKL023WP36103 277 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W ALY1P36117 915 aa3.19□□□□□ -1.9
UBP8YMR223W DOT5P40553 215 aa3.19□□□□□ -1.9
UBP8YMR223W LCL3P53153 274 aa3.19□□□□□ -1.9
UBP8YMR223W WSC2P53832 503 aa3.19□□□□□ -1.9
UBP8YMR223W MSC3Q05812 728 aa3.19□□□□□ -1.9
UBP8YMR223W TEN1Q07921 160 aa3.19□□□□□ -1.9
UBP8YMR223W TCO89Q08921 799 aa3.19□□□□□ -1.9
UBP8YMR223W RIM20Q12033 661 aa3.19□□□□□ -1.9
UBP8YMR223W GIS3Q12418 502 aa3.19□□□□□ -1.9
UBP8YMR223W CTF3Q12748 733 aa3.19□□□□□ -1.9
UBP8YMR223W SOD1P00445 154 aaKnown RBP3.18□□□□□ -1.9
UBP8YMR223W CLB3P24870 427 aa3.18□□□□□ -1.9
UBP8YMR223W RNA14P25298 677 aaKnown RBP3.18□□□□□ -1.9
UBP8YMR223W YCR007CP25354 239 aa3.18□□□□□ -1.9
UBP8YMR223W YIM1P28625 365 aa3.18□□□□□ -1.9
UBP8YMR223W CRM1P30822 1084 aaKnown RBP3.18□□□□□ -1.9
UBP8YMR223W EFB1P32471 206 aaKnown RBP3.18□□□□□ -1.9
UBP8YMR223W MGM101P32787 269 aaKnown RBP3.18□□□□□ -1.9
UBP8YMR223W YBL059WP34224 193 aa3.18□□□□□ -1.9
UBP8YMR223W ECM4P36156 370 aa3.18□□□□□ -1.9
UBP8YMR223W THI2P38141 450 aa3.18□□□□□ -1.9
UBP8YMR223W YBL029WP38201 376 aa3.18□□□□□ -1.9
UBP8YMR223W MSG5P38590 489 aa3.18□□□□□ -1.9
UBP8YMR223W RFC3P38629 340 aa3.18□□□□□ -1.9
UBP8YMR223W STN1P38960 494 aa3.18□□□□□ -1.9
UBP8YMR223W MET28P40573 187 aa3.18□□□□□ -1.9
UBP8YMR223W ALK1P43633 760 aaKnown RBP3.18□□□□□ -1.9
UBP8YMR223W ARP5P53946 755 aa3.18□□□□□ -1.9
UBP8YMR223W RPC11Q04307 110 aaPredicted RBP3.18□□□□□ -1.9
UBP8YMR223W RBD2Q12270 262 aa3.18□□□□□ -1.9
UBP8YMR223W APC2Q12440 853 aa3.18□□□□□ -1.9
UBP8YMR223W SPE4Q12455 300 aa3.18□□□□□ -1.9
UBP8YMR223W MRPL23Q12487 163 aaPredicted RBP3.18□□□□□ -1.9
UBP8YMR223W CLC1P17891 233 aa3.17□□□□□ -1.9
UBP8YMR223W NAM9P27929 486 aa3.17□□□□□ -1.9
UBP8YMR223W HSP104P31539 908 aaKnown RBP3.17□□□□□ -1.9
UBP8YMR223W ACP1P32463 125 aa3.17□□□□□ -1.9
UBP8YMR223W TPO5P36029 618 aa3.17□□□□□ -1.9
UBP8YMR223W KTR3P38130 404 aaPredicted RBP3.17□□□□□ -1.9
UBP8YMR223W HAT2P39984 401 aa3.17□□□□□ -1.9
UBP8YMR223W YIL089WP40500 205 aa3.17□□□□□ -1.9
UBP8YMR223W CHS6P40955 746 aa3.17□□□□□ -1.9
UBP8YMR223W SCD6P45978 349 aaKnown RBP RIP-Chip data3.17□□□□□ -1.9not detected
UBP8YMR223W RPS7BP48164 190 aaKnown RBP3.17□□□□□ -1.9
UBP8YMR223W TRF5P48561 642 aaKnown RBP3.17□□□□□ -1.9
UBP8YMR223W VID30P53076 958 aa3.17□□□□□ -1.9
UBP8YMR223W MLC1P53141 149 aa3.17□□□□□ -1.9
UBP8YMR223W DUG3P53871 357 aa3.17□□□□□ -1.9
UBP8YMR223W RHO5P53879 331 aaKnown RBP3.17□□□□□ -1.9
UBP8YMR223W RPA49Q01080 415 aaPredicted RBP3.17□□□□□ -1.9
UBP8YMR223W ARR2Q06597 130 aa3.17□□□□□ -1.9
UBP8YMR223W YLR413WQ06689 675 aa3.17□□□□□ -1.9
UBP8YMR223W TMC1Q08422 150 aaPredicted RBP3.17□□□□□ -1.9
UBP8YMR223W ERV2Q12284 196 aa3.17□□□□□ -1.9
UBP8YMR223W LDB17Q12342 491 aa3.17□□□□□ -1.9
UBP8YMR223W PRP2P20095 876 aaPredicted RBP3.16□□□□□ -1.9
UBP8YMR223W ISY1P21374 235 aaPredicted RBP3.16□□□□□ -1.9
UBP8YMR223W SGV1P23293 657 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W VMA16P23968 213 aa3.16□□□□□ -1.9
UBP8YMR223W ARO2P28777 376 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W PAP1P29468 568 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W SEF1P34228 1148 aa3.16□□□□□ -1.9
UBP8YMR223W KDX1P36005 433 aa3.16□□□□□ -1.9
UBP8YMR223W UBP11P36026 717 aa3.16□□□□□ -1.9
UBP8YMR223W REG2P38232 338 aa3.16□□□□□ -1.9
UBP8YMR223W RFS1P38234 210 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W LIN1P38852 340 aaPredicted RBP3.16□□□□□ -1.9
UBP8YMR223W LOC1P43586 204 aaPredicted RBP3.16□□□□□ -1.9
UBP8YMR223W LIA1P47120 325 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W YJR154WP47181 346 aa3.16□□□□□ -1.9
UBP8YMR223W YGR111WP53265 400 aa3.16□□□□□ -1.9
UBP8YMR223W YGR127WP53275 312 aa3.16□□□□□ -1.9
UBP8YMR223W MNT4P53745 580 aa3.16□□□□□ -1.9
UBP8YMR223W RTC4P53850 401 aa3.16□□□□□ -1.9
UBP8YMR223W YNL247WP53852 767 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W YNL143CP53908 130 aa3.16□□□□□ -1.9
UBP8YMR223W YLR152CP54072 576 aa3.16□□□□□ -1.9
UBP8YMR223W EGD1Q02642 157 aaKnown RBP3.16□□□□□ -1.9
UBP8YMR223W SLD5Q03406 294 aa3.16□□□□□ -1.9
UBP8YMR223W VPS20Q04272 221 aa3.16□□□□□ -1.9
UBP8YMR223W SOV1Q04748 898 aa3.16□□□□□ -1.9
UBP8YMR223W UAF30Q08747 228 aa3.16□□□□□ -1.9
UBP8YMR223W VPS63O13549 108 aa3.15□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms