RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C IDH2P28241 369 aaKnown RBP1.71□□□□□ -2.14
PCF11YDR228C YJR011CP47086 261 aaPredicted RBP1.71□□□□□ -2.14
PCF11YDR228C ILV5P06168 395 aaKnown RBP1.7□□□□□ -2.14
PCF11YDR228C GEX1P25596 615 aa1.7□□□□□ -2.14
PCF11YDR228C MIG3P39943 394 aa1.7□□□□□ -2.14
PCF11YDR228C SIM1P40472 476 aa1.7□□□□□ -2.14
PCF11YDR228C MDE1P47095 244 aa1.7□□□□□ -2.14
PCF11YDR228C IZH2Q12442 317 aa1.7□□□□□ -2.14
PCF11YDR228C RPI1P23250 407 aaKnown RBP1.69□□□□□ -2.14
PCF11YDR228C SNT1P25357 1226 aa1.69□□□□□ -2.14
PCF11YDR228C YHR054CP38780 354 aa1.69□□□□□ -2.14
PCF11YDR228C SEO1P39709 593 aa1.69□□□□□ -2.14
PCF11YDR228C YIF1P53845 314 aaKnown RBP1.69□□□□□ -2.14
PCF11YDR228C YRM1Q12340 786 aa1.69□□□□□ -2.14
PCF11YDR228C GRX6Q12438 231 aa1.69□□□□□ -2.14
PCF11YDR228C SIN4P32259 974 aa1.69□□□□□ -2.14
PCF11YDR228C AZR1P50080 613 aa1.69□□□□□ -2.14
PCF11YDR228C RHO5P53879 331 aaKnown RBP1.69□□□□□ -2.14
PCF11YDR228C BCH1Q05029 724 aa1.69□□□□□ -2.14
PCF11YDR228C MDM30Q05930 598 aa1.69□□□□□ -2.14
PCF11YDR228C PRB1P09232 635 aa1.68□□□□□ -2.14
PCF11YDR228C SPO12P17123 173 aa1.68□□□□□ -2.14
PCF11YDR228C GPI10P30777 616 aa1.68□□□□□ -2.14
PCF11YDR228C HXT3P32466 567 aaKnown RBP1.68□□□□□ -2.14
PCF11YDR228C HIR2P32480 875 aa1.68□□□□□ -2.14
PCF11YDR228C VHC1P38329 1120 aa1.68□□□□□ -2.14
PCF11YDR228C PCF11P39081 626 aaPredicted RBP1.68□□□□□ -2.14
PCF11YDR228C ESL1P40456 1118 aa1.68□□□□□ -2.14
PCF11YDR228C HMS2P47175 358 aa1.68□□□□□ -2.14
PCF11YDR228C JID1Q12350 301 aa1.68□□□□□ -2.14
PCF11YDR228C RPB5P20434 215 aa1.67□□□□□ -2.14
PCF11YDR228C SPT10P35208 640 aa1.67□□□□□ -2.14
PCF11YDR228C BET5Q03630 159 aa1.67□□□□□ -2.14
PCF11YDR228C VHS1Q03785 461 aa1.67□□□□□ -2.14
PCF11YDR228C IES4Q08561 116 aa1.67□□□□□ -2.14
PCF11YDR228C RKM1Q08961 583 aaPredicted RBP1.67□□□□□ -2.14
PCF11YDR228C SNU66Q12420 587 aaPredicted RBP1.67□□□□□ -2.14
PCF11YDR228C BMT2P38278 337 aa1.67□□□□□ -2.14
PCF11YDR228C RTC2P38279 296 aa1.67□□□□□ -2.14
PCF11YDR228C SMF1P38925 575 aa1.67□□□□□ -2.14
PCF11YDR228C YAL037WP39728 267 aa1.67□□□□□ -2.14
PCF11YDR228C DFG10P40526 253 aa1.67□□□□□ -2.14
PCF11YDR228C MTQ1P53944 314 aa1.67□□□□□ -2.14
PCF11YDR228C GPI15P53961 229 aa1.67□□□□□ -2.14
PCF11YDR228C TAF12Q03761 539 aa1.67□□□□□ -2.14
PCF11YDR228C RIM20Q12033 661 aa1.67□□□□□ -2.14
PCF11YDR228C YML133CQ03099 1374 aa1.66□□□□□ -2.14
PCF11YDR228C YLL067CQ07888 1374 aa1.66□□□□□ -2.14
PCF11YDR228C YLL066CQ99208 1374 aa1.66□□□□□ -2.14
PCF11YDR228C ARG3P05150 338 aa1.66□□□□□ -2.14
PCF11YDR228C PPH22P23595 377 aa1.66□□□□□ -2.14
PCF11YDR228C KRE2P27809 442 aa1.66□□□□□ -2.14
PCF11YDR228C PHA2P32452 334 aa1.66□□□□□ -2.14
PCF11YDR228C ARA1P38115 344 aa1.66□□□□□ -2.14
PCF11YDR228C ALD5P40047 520 aaKnown RBP1.66□□□□□ -2.14
PCF11YDR228C CHS6P40955 746 aa1.66□□□□□ -2.14
PCF11YDR228C SFH5P47008 294 aa1.66□□□□□ -2.14
PCF11YDR228C IGO1P53897 168 aa1.66□□□□□ -2.14
PCF11YDR228C TIM10P87108 93 aa1.66□□□□□ -2.14
PCF11YDR228C RPT6Q01939 405 aaKnown RBP1.66□□□□□ -2.14
PCF11YDR228C NDE2Q07500 545 aa1.66□□□□□ -2.14
PCF11YDR228C YPQ1Q12010 308 aa1.66□□□□□ -2.14
PCF11YDR228C SRL2Q12020 392 aa1.66□□□□□ -2.14
PCF11YDR228C SMY1P32364 656 aaKnown RBP1.65□□□□□ -2.14
PCF11YDR228C SBE22P38814 852 aa1.65□□□□□ -2.14
PCF11YDR228C PGU1P47180 361 aa1.65□□□□□ -2.14
PCF11YDR228C BNS1P50084 137 aa1.65□□□□□ -2.14
PCF11YDR228C YGR018CP53211 109 aa1.65□□□□□ -2.14
PCF11YDR228C RPA49Q01080 415 aaPredicted RBP1.65□□□□□ -2.14
PCF11YDR228C ECM11Q04110 302 aa1.65□□□□□ -2.14
PCF11YDR228C VTA1Q06263 330 aa1.65□□□□□ -2.14
PCF11YDR228C CMS1Q07897 291 aaKnown RBP1.65□□□□□ -2.14
PCF11YDR228C REX4Q08237 289 aa1.65□□□□□ -2.14
PCF11YDR228C DNL4Q08387 944 aaPredicted RBP1.65□□□□□ -2.14
PCF11YDR228C RAX1Q08760 435 aa1.65□□□□□ -2.14
PCF11YDR228C CBP6P07253 162 aaPredicted RBP1.65□□□□□ -2.15
PCF11YDR228C MSI1P13712 422 aa1.65□□□□□ -2.15
PCF11YDR228C AAT2P23542 418 aaKnown RBP1.65□□□□□ -2.15
PCF11YDR228C PRR1P28708 518 aa1.65□□□□□ -2.15
PCF11YDR228C RML2P32611 393 aa1.65□□□□□ -2.15
PCF11YDR228C MRPS9P38120 278 aa1.65□□□□□ -2.15
PCF11YDR228C UTP9P38882 575 aaKnown RBP1.65□□□□□ -2.15
PCF11YDR228C BAT1P38891 393 aaKnown RBP1.65□□□□□ -2.15
PCF11YDR228C YER186CP40101 306 aa1.65□□□□□ -2.15
PCF11YDR228C ADA2Q02336 434 aa1.65□□□□□ -2.15
PCF11YDR228C NUP116Q02630 1113 aa1.65□□□□□ -2.15
PCF11YDR228C RIF2Q06208 395 aa1.65□□□□□ -2.15
PCF11YDR228C NIP1P32497 812 aaKnown RBP1.64□□□□□ -2.15
PCF11YDR228C RRP1P35178 278 aaPredicted RBP1.64□□□□□ -2.15
PCF11YDR228C APE3P37302 537 aaKnown RBP1.64□□□□□ -2.15
PCF11YDR228C CHK1P38147 527 aa1.64□□□□□ -2.15
PCF11YDR228C PTI1P39927 425 aaPredicted RBP1.64□□□□□ -2.15
PCF11YDR228C FMS1P50264 508 aa1.64□□□□□ -2.15
PCF11YDR228C AIM32Q04689 311 aa1.64□□□□□ -2.15
PCF11YDR228C YGK3Q12222 375 aaPredicted RBP1.64□□□□□ -2.15
PCF11YDR228C TPT1Q12272 230 aaKnown RBP1.64□□□□□ -2.15
PCF11YDR228C BI3Q9ZZW7 517 aa1.64□□□□□ -2.15
PCF11YDR228C PSK1P31374 1356 aa1.63□□□□□ -2.15
PCF11YDR228C ADH1P00330 348 aaKnown RBP1.63□□□□□ -2.15
PCF11YDR228C SCEIP03882 235 aa1.63□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms