RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C BEM1P29366 551 aa5.75□□□□□ -1.49
DEF1YKL054C RPC34P32910 317 aa5.75□□□□□ -1.49
DEF1YKL054C RIX1P38883 763 aaPredicted RBP5.75□□□□□ -1.49
DEF1YKL054C TOS3P43637 560 aa5.75□□□□□ -1.49
DEF1YKL054C TEN1Q07921 160 aa5.75□□□□□ -1.49
DEF1YKL054C LCB4Q12246 624 aa5.75□□□□□ -1.49
DEF1YKL054C APC2Q12440 853 aa5.75□□□□□ -1.49
DEF1YKL054C CHO2P05374 869 aaKnown RBP5.74□□□□□ -1.49
DEF1YKL054C CDC23P16522 626 aa5.74□□□□□ -1.49
DEF1YKL054C YPS1P32329 569 aa5.74□□□□□ -1.49
DEF1YKL054C SIP1P32578 815 aa5.74□□□□□ -1.49
DEF1YKL054C SPR1P32603 445 aa5.74□□□□□ -1.49
DEF1YKL054C EMP70P32802 667 aa5.74□□□□□ -1.49
DEF1YKL054C GMH1P36125 273 aa5.74□□□□□ -1.49
DEF1YKL054C SPP381P38282 291 aaPredicted RBP5.74□□□□□ -1.49
DEF1YKL054C UTP18P40362 594 aaPredicted RBP5.74□□□□□ -1.49
DEF1YKL054C HAM1P47119 197 aaKnown RBP5.74□□□□□ -1.49
DEF1YKL054C YGR117CP53270 476 aa5.74□□□□□ -1.49
DEF1YKL054C SHR3Q02774 210 aa5.74□□□□□ -1.49
DEF1YKL054C GTO3Q04806 366 aa5.74□□□□□ -1.49
DEF1YKL054C NRT1Q08485 598 aa5.74□□□□□ -1.49
DEF1YKL054C NFT1P0CE68 1218 aa5.74□□□□□ -1.49
DEF1YKL054C APA2P22108 325 aa5.74□□□□□ -1.49
DEF1YKL054C LAC1P28496 418 aa5.74□□□□□ -1.49
DEF1YKL054C YSC83P32792 385 aa5.74□□□□□ -1.49
DEF1YKL054C ARP1P38696 384 aa5.74□□□□□ -1.49
DEF1YKL054C YAR1P46683 200 aa5.74□□□□□ -1.49
DEF1YKL054C YHC3P47040 408 aa5.74□□□□□ -1.49
DEF1YKL054C VPS62P53285 467 aa5.74□□□□□ -1.49
DEF1YKL054C YMR178WQ03219 274 aaKnown RBP5.74□□□□□ -1.49
DEF1YKL054C MLH3Q12083 715 aa5.74□□□□□ -1.49
DEF1YKL054C AIM45Q12480 344 aaKnown RBP5.74□□□□□ -1.49
DEF1YKL054C YPK1P12688 680 aaKnown RBP5.73□□□□□ -1.49
DEF1YKL054C KAR4P25583 335 aa5.73□□□□□ -1.49
DEF1YKL054C SOF1P33750 489 aaKnown RBP5.73□□□□□ -1.49
DEF1YKL054C FMC1P40491 155 aa5.73□□□□□ -1.49
DEF1YKL054C SPG5P42933 373 aa5.73□□□□□ -1.49
DEF1YKL054C DRN1P53255 507 aaKnown RBP5.73□□□□□ -1.49
DEF1YKL054C BUD17P53727 317 aa5.73□□□□□ -1.49
DEF1YKL054C URH1Q04179 340 aa5.73□□□□□ -1.49
DEF1YKL054C DUS4Q06063 367 aa5.73□□□□□ -1.49
DEF1YKL054C GPN3Q06543 272 aa5.73□□□□□ -1.49
DEF1YKL054C LAS17Q12446 633 aa5.73□□□□□ -1.49
DEF1YKL054C RMD5Q12508 421 aa5.73□□□□□ -1.49
DEF1YKL054C YPT1P01123 206 aaKnown RBP5.72□□□□□ -1.49
DEF1YKL054C SCEIP03882 235 aa5.72□□□□□ -1.49
DEF1YKL054C SIR3P06701 978 aa5.72□□□□□ -1.49
DEF1YKL054C COR1P07256 457 aa5.72□□□□□ -1.49
DEF1YKL054C SAR1P20606 190 aaKnown RBP5.72□□□□□ -1.49
DEF1YKL054C GAC1P28006 793 aa5.72□□□□□ -1.49
DEF1YKL054C CWP1P28319 239 aa5.72□□□□□ -1.49
DEF1YKL054C QDR3P38227 689 aa5.72□□□□□ -1.49
DEF1YKL054C ALP1P38971 573 aa5.72□□□□□ -1.49
DEF1YKL054C YER130CP39959 443 aa5.72□□□□□ -1.49
DEF1YKL054C UBC11P52492 156 aa5.72□□□□□ -1.49
DEF1YKL054C BSC6Q08280 497 aa5.72□□□□□ -1.49
DEF1YKL054C PEP4P07267 405 aaKnown RBP5.72□□□□□ -1.49
DEF1YKL054C RHB1P25378 209 aa5.72□□□□□ -1.49
DEF1YKL054C ZIP1P31111 875 aa5.72□□□□□ -1.49
DEF1YKL054C HXT1P32465 570 aa5.72□□□□□ -1.49
DEF1YKL054C PUB1P32588 453 aaKnown RBP RIP-Chip data5.72□□□□□ -1.49not detected
DEF1YKL054C ECT1P33412 323 aa5.72□□□□□ -1.49
DEF1YKL054C RPF2P36160 344 aaKnown RBP5.72□□□□□ -1.49
DEF1YKL054C ADE17P38009 592 aaKnown RBP5.72□□□□□ -1.49
DEF1YKL054C YIR042CP40586 236 aa5.72□□□□□ -1.49
DEF1YKL054C SNG1P46950 547 aa5.72□□□□□ -1.49
DEF1YKL054C RRN11Q04712 507 aa5.72□□□□□ -1.49
DEF1YKL054C CTS2Q06350 511 aa5.72□□□□□ -1.49
DEF1YKL054C YDR262WQ12331 272 aa5.72□□□□□ -1.49
DEF1YKL054C RAP1P11938 827 aa5.71□□□□□ -1.49
DEF1YKL054C KSS1P14681 368 aa5.71□□□□□ -1.49
DEF1YKL054C RPL32P38061 130 aaKnown RBP5.71□□□□□ -1.49
DEF1YKL054C ICS2P38284 255 aa5.71□□□□□ -1.49
DEF1YKL054C CIN4P39110 191 aa5.71□□□□□ -1.49
DEF1YKL054C YHB1P39676 399 aaKnown RBP5.71□□□□□ -1.49
DEF1YKL054C BNA6P43619 295 aa5.71□□□□□ -1.49
DEF1YKL054C STE24P47154 453 aa5.71□□□□□ -1.49
DEF1YKL054C ATG4P53867 494 aa5.71□□□□□ -1.49
DEF1YKL054C ESBP6P53918 673 aa5.71□□□□□ -1.49
DEF1YKL054C RPL24AP04449 155 aaKnown RBP5.71□□□□□ -1.5
DEF1YKL054C RHO2P06781 192 aa5.71□□□□□ -1.5
DEF1YKL054C YCR016WP25617 290 aaKnown RBP5.71□□□□□ -1.5
DEF1YKL054C STP2P38704 541 aa5.71□□□□□ -1.5
DEF1YKL054C LNP1P38878 278 aa5.71□□□□□ -1.5
DEF1YKL054C PTR3P43606 678 aa5.71□□□□□ -1.5
DEF1YKL054C ORC3P54790 616 aa5.71□□□□□ -1.5
DEF1YKL054C ENT5Q03769 411 aaKnown RBP5.71□□□□□ -1.5
DEF1YKL054C YLR283WQ05867 314 aa5.71□□□□□ -1.5
DEF1YKL054C NSE1Q07913 336 aa5.71□□□□□ -1.5
DEF1YKL054C COX2P00410 251 aa5.7□□□□□ -1.5
DEF1YKL054C RPP2AP05319 106 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C CHO1P08456 276 aa5.7□□□□□ -1.5
DEF1YKL054C ERG11P10614 530 aa5.7□□□□□ -1.5
DEF1YKL054C YPK2P18961 677 aa5.7□□□□□ -1.5
DEF1YKL054C FUB1P25659 250 aa5.7□□□□□ -1.5
DEF1YKL054C PRP21P32524 280 aaPredicted RBP5.7□□□□□ -1.5
DEF1YKL054C PAD1P33751 242 aaKnown RBP RIP-Chip data5.7□□□□□ -1.5not detected
DEF1YKL054C MTR2P34232 184 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C LHS1P36016 881 aa5.7□□□□□ -1.5
DEF1YKL054C VHC1P38329 1120 aa5.7□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 25.4 ms