RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	DRN1	P53255	507 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	ZPR1	P53303	486 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	CTL1	Q03220	320 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	RBA50	Q04418	439 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	URA4	P20051	364 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	YHR054C	P38780	354 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	PHO90	P39535	881 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	PES4	P39684	611 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	YIR014W	P40570	242 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	GAT1	P43574	510 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	URB2	P47108	1174 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	YGR016W	P53209	190 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	YGR111W	P53265	400 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	SLG1	P54867	378 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	SKO1	Q02100	647 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	LGE1	Q02796	332 aa	Known RBP	4.67	□□□□□ -1.66
CAF16	YFL028C	SSK1	Q07084	712 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	DCI1	Q08558	271 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	YOR365C	Q08844	703 aa		4.67	□□□□□ -1.66
CAF16	YFL028C	HIP1	P06775	603 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	RHO2	P06781	192 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	MATALPHA2	P0CY08	210 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	HMLALPHA2	P0CY09	210 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	SGV1	P23293	657 aa	Known RBP	4.66	□□□□□ -1.66
CAF16	YFL028C	MCM4	P30665	933 aa	Known RBP	4.66	□□□□□ -1.66
CAF16	YFL028C	NIP100	P33420	868 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	MSN2	P33748	704 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	ERG7	P38604	731 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	LEU5	P38702	357 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	EPL1	P43572	832 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	COS5	P47187	383 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	KTR5	P53966	522 aa	Predicted RBP	4.66	□□□□□ -1.66
CAF16	YFL028C	NUP100	Q02629	959 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	VTC3	Q02725	835 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	HOT1	Q03213	719 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	IZH1	Q03419	316 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	ACL4	Q03771	387 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	MMR1	Q06324	491 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	SUE1	Q06524	206 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	COS7	Q07788	383 aa		4.66	□□□□□ -1.66
CAF16	YFL028C	CFT2	Q12102	859 aa	Predicted RBP	4.66	□□□□□ -1.66
CAF16	YFL028C	RPN5	Q12250	445 aa	Known RBP	4.66	□□□□□ -1.66
CAF16	YFL028C	YPR089W	O13585	888 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	TYR1	P20049	452 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	SNC1	P31109	117 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	PHO88	P38264	188 aa	Predicted RBP	4.65	□□□□□ -1.67
CAF16	YFL028C	VPS45	P38932	577 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	CAJ1	P39101	391 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	VAB2	P40003	282 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	CFD1	P40558	293 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	POP1	P41812	875 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	ARP5	P53946	755 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	EKI1	Q03764	534 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	DIC1	Q06143	298 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	VAM3	Q12241	283 aa		4.65	□□□□□ -1.67
CAF16	YFL028C	MES1	P00958	751 aa	Known RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	GPH1	P06738	902 aa	Known RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	CLN1	P20437	546 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	RPS2	P25443	254 aa	Known RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	BRF1	P29056	596 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	PDR3	P33200	976 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	PIM1	P36775	1133 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	DUG2	P38149	878 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	VHC1	P38329	1120 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	TOM71	P38825	639 aa	Known RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	NDT80	P38830	627 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	SER3	P40054	469 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	YJR154W	P47181	346 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	ATP22	P50273	684 aa	Predicted RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	RMD9	P53140	646 aa	Known RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	YMR130W	Q04223	302 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	RSF1	Q05043	376 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	YDR286C	Q05530	114 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	DSE3	Q08729	430 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	HER1	Q12276	1246 aa		4.64	□□□□□ -1.67
CAF16	YFL028C	BRR1	Q99177	341 aa	Predicted RBP	4.64	□□□□□ -1.67
CAF16	YFL028C	VPS13	Q07878	3144 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	SAM1	P10659	382 aa	Known RBP	4.63	□□□□□ -1.67
CAF16	YFL028C	BAR1	P12630	587 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	ATP10	P18496	279 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	PUP2	P32379	260 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	ATP11	P32453	318 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	HIR2	P32480	875 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	UTR4	P32626	227 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	LTV1	P34078	463 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	BMH2	P34730	273 aa	Known RBP	4.63	□□□□□ -1.67
CAF16	YFL028C	PHD1	P36093	366 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	MMS4	P38257	691 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	BTN2	P53286	410 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	RHO4	Q00246	291 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	RIM13	Q03792	727 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	VPS20	Q04272	221 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	YDR341C	Q05506	607 aa	Known RBP	4.63	□□□□□ -1.67
CAF16	YFL028C	THI7	Q05998	598 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	DIS3	Q08162	1001 aa	Known RBP	4.63	□□□□□ -1.67
CAF16	YFL028C	SMF3	Q12078	473 aa	Predicted RBP	4.63	□□□□□ -1.67
CAF16	YFL028C	FRE6	Q12473	712 aa		4.63	□□□□□ -1.67
CAF16	YFL028C	RPL42A	P0CX27	106 aa	Known RBP	4.62	□□□□□ -1.67
CAF16	YFL028C	RPL42B	P0CX28	106 aa	Known RBP	4.62	□□□□□ -1.67
CAF16	YFL028C	VMA2	P16140	517 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 25.2 ms