RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YGR111WP53265 400 aa1.17□□□□□ -2.22
CDC39YCR093W RSC9Q03124 581 aa1.17□□□□□ -2.22
CDC39YCR093W TDA9Q04545 1251 aa1.17□□□□□ -2.22
CDC39YCR093W TIM18Q08749 192 aa1.17□□□□□ -2.22
CDC39YCR093W NAM2P11325 894 aa1.17□□□□□ -2.22
CDC39YCR093W YAP1P19880 650 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W SPB1P25582 841 aaPredicted RBP1.17□□□□□ -2.22
CDC39YCR093W VPH1P32563 840 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W COS9P36034 407 aa1.17□□□□□ -2.22
CDC39YCR093W SLM4P38247 162 aa1.17□□□□□ -2.22
CDC39YCR093W SEC24P40482 926 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W SWP82P43554 623 aa1.17□□□□□ -2.22
CDC39YCR093W TAF11Q04226 346 aa1.17□□□□□ -2.22
CDC39YCR093W PRS5Q12265 496 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W EDE1P34216 1381 aa1.16□□□□□ -2.22
CDC39YCR093W SSN2P38931 1420 aa1.16□□□□□ -2.22
CDC39YCR093W SMC4Q12267 1418 aa1.16□□□□□ -2.22
CDC39YCR093W SRP54P20424 541 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W FUN19P28003 413 aaPredicted RBP1.16□□□□□ -2.22
CDC39YCR093W SWI3P32591 825 aa1.16□□□□□ -2.22
CDC39YCR093W SOR1P35497 357 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W RRN10P38204 145 aa1.16□□□□□ -2.22
CDC39YCR093W YMR262WP38430 313 aa1.16□□□□□ -2.22
CDC39YCR093W SMF1P38925 575 aa1.16□□□□□ -2.22
CDC39YCR093W YIL029CP40538 142 aa1.16□□□□□ -2.22
CDC39YCR093W ATP22P50273 684 aaPredicted RBP1.16□□□□□ -2.22
CDC39YCR093W YMR181CQ03231 154 aa1.16□□□□□ -2.22
CDC39YCR093W IZH1Q03419 316 aa1.16□□□□□ -2.22
CDC39YCR093W EKI1Q03764 534 aa1.16□□□□□ -2.22
CDC39YCR093W YMR254CQ04838 102 aa1.16□□□□□ -2.22
CDC39YCR093W THI7Q05998 598 aa1.16□□□□□ -2.22
CDC39YCR093W FMP45Q07651 309 aa1.16□□□□□ -2.22
CDC39YCR093W RLM1Q12224 676 aa1.16□□□□□ -2.22
CDC39YCR093W VAM3Q12241 283 aa1.16□□□□□ -2.22
CDC39YCR093W RGT2Q12300 763 aa1.16□□□□□ -2.22
CDC39YCR093W YLL053CP0CD98 152 aa1.16□□□□□ -2.22
CDC39YCR093W SSE1P32589 693 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W UTR4P32626 227 aa1.16□□□□□ -2.22
CDC39YCR093W SEC66P33754 206 aa1.16□□□□□ -2.22
CDC39YCR093W SKT5P34226 696 aa1.16□□□□□ -2.22
CDC39YCR093W SEC9P40357 651 aa1.16□□□□□ -2.22
CDC39YCR093W ATG27P46989 271 aa1.16□□□□□ -2.22
CDC39YCR093W YPL014WQ02606 381 aa1.16□□□□□ -2.22
CDC39YCR093W YPL068CQ02749 293 aa1.16□□□□□ -2.22
CDC39YCR093W YPL107WQ02873 248 aa1.16□□□□□ -2.22
CDC39YCR093W SMA2Q04658 369 aa1.16□□□□□ -2.22
CDC39YCR093W RPL31BP0C2H9 113 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W GRR1P24814 1151 aa1.16□□□□□ -2.22
CDC39YCR093W SNT1P25357 1226 aa1.16□□□□□ -2.22
CDC39YCR093W BUD14P27637 709 aa1.16□□□□□ -2.22
CDC39YCR093W CHS7P38843 316 aa1.16□□□□□ -2.22
CDC39YCR093W CAK1P43568 368 aaPredicted RBP1.16□□□□□ -2.22
CDC39YCR093W EPL1P43572 832 aa1.16□□□□□ -2.22
CDC39YCR093W WWM1P43582 211 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W RPS0BP46654 252 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W TAM41P53230 385 aa1.16□□□□□ -2.22
CDC39YCR093W BTN2P53286 410 aa1.16□□□□□ -2.22
CDC39YCR093W SOL4P53315 255 aa1.16□□□□□ -2.22
CDC39YCR093W YIF1P53845 314 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W RHO4Q00246 291 aa1.16□□□□□ -2.22
CDC39YCR093W PPM1Q04081 328 aa1.16□□□□□ -2.22
CDC39YCR093W DTD1Q07648 150 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W RRP5Q05022 1729 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W STE7P06784 515 aa1.16□□□□□ -2.22
CDC39YCR093W ATP1P07251 545 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W AMD2P22580 549 aa1.16□□□□□ -2.22
CDC39YCR093W ARO2P28777 376 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W MNN2P38069 597 aa1.16□□□□□ -2.22
CDC39YCR093W SEC28P40509 296 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W BNA3P47039 444 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W KEL2P50090 882 aa1.16□□□□□ -2.22
CDC39YCR093W YGL036WP53185 909 aaPredicted RBP1.16□□□□□ -2.22
CDC39YCR093W POP6P53218 158 aa1.16□□□□□ -2.22
CDC39YCR093W TAF12Q03761 539 aa1.16□□□□□ -2.22
CDC39YCR093W CIA1Q05583 330 aa1.16□□□□□ -2.22
CDC39YCR093W YLR108CQ12259 485 aa1.16□□□□□ -2.22
CDC39YCR093W YLR111WQ12528 110 aa1.16□□□□□ -2.22
CDC39YCR093W IQG1Q12280 1495 aa1.16□□□□□ -2.22
CDC39YCR093W RTC1Q08281 1341 aa1.16□□□□□ -2.22
CDC39YCR093W RPL20AP0CX23 172 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W RPL20BP0CX24 172 aaPredicted RBP1.16□□□□□ -2.22
CDC39YCR093W ASP3-2P0CX77 362 aa1.16□□□□□ -2.22
CDC39YCR093W ASP3-3P0CX78 362 aa1.16□□□□□ -2.22
CDC39YCR093W ASP3-4P0CX79 362 aa1.16□□□□□ -2.22
CDC39YCR093W ASP3-1P0CZ17 362 aa1.16□□□□□ -2.22
CDC39YCR093W APE1P14904 514 aa1.16□□□□□ -2.22
CDC39YCR093W SAR1P20606 190 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W PHO91P27514 894 aa1.16□□□□□ -2.22
CDC39YCR093W DFG10P40526 253 aa1.16□□□□□ -2.22
CDC39YCR093W MKC7P53379 596 aa1.16□□□□□ -2.22
CDC39YCR093W RPT4P53549 437 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W DBP9Q06218 594 aaKnown RBP1.16□□□□□ -2.22
CDC39YCR093W NSE1Q07913 336 aa1.16□□□□□ -2.22
CDC39YCR093W SMF3Q12078 473 aaPredicted RBP1.16□□□□□ -2.22
CDC39YCR093W SEC3P33332 1336 aaKnown RBP1.15□□□□□ -2.22
CDC39YCR093W TPK3P05986 398 aa1.15□□□□□ -2.22
CDC39YCR093W MAS1P10507 462 aa1.15□□□□□ -2.22
CDC39YCR093W CLN3P13365 580 aa1.15□□□□□ -2.22
CDC39YCR093W AIM17P23180 465 aaKnown RBP1.15□□□□□ -2.22
CDC39YCR093W SGV1P23293 657 aaKnown RBP1.15□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 42 ms