RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeastyeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
WHI3YNL197C HEL1P36113 551 aa3.4□□□□□ -1.87
WHI3YNL197C CCT2P39076 527 aaKnown RBP3.4□□□□□ -1.87
WHI3YNL197C ESBP6P53918 673 aa3.4□□□□□ -1.87
WHI3YNL197C SKO1Q02100 647 aa3.4□□□□□ -1.87
WHI3YNL197C IZH1Q03419 316 aa3.4□□□□□ -1.87
WHI3YNL197C HEL2Q05580 639 aaKnown RBP3.4□□□□□ -1.87
WHI3YNL197C THI7Q05998 598 aa3.4□□□□□ -1.87
WHI3YNL197C GSH2Q08220 491 aa3.4□□□□□ -1.87
WHI3YNL197C ATX2Q12067 313 aa3.4□□□□□ -1.87
WHI3YNL197C BSC1Q12140 328 aa3.4□□□□□ -1.87
WHI3YNL197C MES1P00958 751 aaKnown RBP3.39□□□□□ -1.87
WHI3YNL197C HIP1P06775 603 aa3.39□□□□□ -1.87
WHI3YNL197C RHO2P06781 192 aa3.39□□□□□ -1.87
WHI3YNL197C NIP100P33420 868 aa3.39□□□□□ -1.87
WHI3YNL197C LTV1P34078 463 aa3.39□□□□□ -1.87
WHI3YNL197C CUE2P36075 443 aaKnown RBP3.39□□□□□ -1.87
WHI3YNL197C TOM22P49334 152 aa3.39□□□□□ -1.87
WHI3YNL197C YGL138CP53122 345 aa3.39□□□□□ -1.87
WHI3YNL197C YGR111WP53265 400 aa3.39□□□□□ -1.87
WHI3YNL197C PEX25Q02969 394 aa3.39□□□□□ -1.87
WHI3YNL197C SSK1Q07084 712 aa3.39□□□□□ -1.87
WHI3YNL197C RKM1Q08961 583 aaPredicted RBP3.39□□□□□ -1.87
WHI3YNL197C VAM3Q12241 283 aa3.39□□□□□ -1.87
WHI3YNL197C RKM5Q12367 367 aa3.39□□□□□ -1.87
WHI3YNL197C CTF3Q12748 733 aa3.39□□□□□ -1.87
WHI3YNL197C GPH1P06738 902 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C LPD1P09624 499 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C MDM10P18409 493 aa3.38□□□□□ -1.87
WHI3YNL197C SIN4P32259 974 aa3.38□□□□□ -1.87
WHI3YNL197C PRP21P32524 280 aaPredicted RBP3.38□□□□□ -1.87
WHI3YNL197C PDR3P33200 976 aa3.38□□□□□ -1.87
WHI3YNL197C PHD1P36093 366 aa3.38□□□□□ -1.87
WHI3YNL197C EFM2P38347 419 aa3.38□□□□□ -1.87
WHI3YNL197C GDI1P39958 451 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C PCL6P40038 420 aa3.38□□□□□ -1.87
WHI3YNL197C VRG4P40107 337 aa3.38□□□□□ -1.87
WHI3YNL197C RTS2P40962 232 aa3.38□□□□□ -1.87
WHI3YNL197C BNA3P47039 444 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C URB2P47108 1174 aa3.38□□□□□ -1.87
WHI3YNL197C OCA1P50946 238 aaPredicted RBP3.38□□□□□ -1.87
WHI3YNL197C YDR286CQ05530 114 aa3.38□□□□□ -1.87
WHI3YNL197C KEL3Q08979 651 aaPredicted RBP3.38□□□□□ -1.87
WHI3YNL197C CLN1P20437 546 aa3.38□□□□□ -1.87
WHI3YNL197C MGM1P32266 881 aa3.38□□□□□ -1.87
WHI3YNL197C HIR2P32480 875 aa3.38□□□□□ -1.87
WHI3YNL197C UTR4P32626 227 aa3.38□□□□□ -1.87
WHI3YNL197C YPK3P38070 525 aa3.38□□□□□ -1.87
WHI3YNL197C ARA1P38115 344 aa3.38□□□□□ -1.87
WHI3YNL197C GND1P38720 489 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C ATF1P40353 525 aa3.38□□□□□ -1.87
WHI3YNL197C TFG2P41896 400 aaPredicted RBP3.38□□□□□ -1.87
WHI3YNL197C PSA1P41940 361 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C GUF1P46943 645 aa3.38□□□□□ -1.87
WHI3YNL197C YJL055WP47044 245 aa3.38□□□□□ -1.87
WHI3YNL197C ALT2P52892 507 aa3.38□□□□□ -1.87
WHI3YNL197C CUL3P53202 744 aa3.38□□□□□ -1.87
WHI3YNL197C RPT4P53549 437 aaKnown RBP3.38□□□□□ -1.87
WHI3YNL197C HOT1Q03213 719 aa3.38□□□□□ -1.87
WHI3YNL197C YMR087WQ04299 284 aa3.38□□□□□ -1.87
WHI3YNL197C BNA5Q05979 453 aa3.38□□□□□ -1.87
WHI3YNL197C THI20Q08224 551 aa3.38□□□□□ -1.87
WHI3YNL197C CFT2Q12102 859 aaPredicted RBP3.38□□□□□ -1.87
WHI3YNL197C RPL1AP0CX43 217 aaKnown RBP3.37□□□□□ -1.87
WHI3YNL197C RPL1BP0CX44 217 aaKnown RBP3.37□□□□□ -1.87
WHI3YNL197C YFL068WP0CX99 160 aa3.37□□□□□ -1.87
WHI3YNL197C YLL066W-AP0CY00 160 aa3.37□□□□□ -1.87
WHI3YNL197C YLL067W-AP0CY01 160 aa3.37□□□□□ -1.87
WHI3YNL197C AMD1P15274 810 aaKnown RBP3.37□□□□□ -1.87
WHI3YNL197C URA4P20051 364 aa3.37□□□□□ -1.87
WHI3YNL197C KRE2P27809 442 aa3.37□□□□□ -1.87
WHI3YNL197C MCM4P30665 933 aaKnown RBP3.37□□□□□ -1.87
WHI3YNL197C NTC20P38302 140 aaPredicted RBP3.37□□□□□ -1.87
WHI3YNL197C ERG7P38604 731 aa3.37□□□□□ -1.87
WHI3YNL197C IAH1P41734 238 aa3.37□□□□□ -1.87
WHI3YNL197C YNL181WP53878 407 aa3.37□□□□□ -1.87
WHI3YNL197C RSF1Q05043 376 aa3.37□□□□□ -1.87
WHI3YNL197C ECI1Q05871 280 aa3.37□□□□□ -1.87
WHI3YNL197C PHO92Q06390 306 aa3.37□□□□□ -1.87
WHI3YNL197C SKS1Q12505 502 aa3.37□□□□□ -1.87
WHI3YNL197C ARO3P14843 370 aaKnown RBP3.36□□□□□ -1.87
WHI3YNL197C GLK1P17709 500 aaKnown RBP3.36□□□□□ -1.87
WHI3YNL197C SPO7P18410 259 aa3.36□□□□□ -1.87
WHI3YNL197C CAJ1P39101 391 aa3.36□□□□□ -1.87
WHI3YNL197C XBP1P40489 647 aa3.36□□□□□ -1.87
WHI3YNL197C YNL234WP53857 426 aa3.36□□□□□ -1.87
WHI3YNL197C BET4Q00618 327 aa3.36□□□□□ -1.87
WHI3YNL197C SLD5Q03406 294 aa3.36□□□□□ -1.87
WHI3YNL197C PGC1Q08959 321 aa3.36□□□□□ -1.87
WHI3YNL197C VPS54Q12071 889 aa3.36□□□□□ -1.87
WHI3YNL197C BRR1Q99177 341 aaPredicted RBP3.36□□□□□ -1.87
WHI3YNL197C COX3P00420 269 aa3.36□□□□□ -1.87
WHI3YNL197C VHC1P38329 1120 aa3.36□□□□□ -1.87
WHI3YNL197C YHR054CP38780 354 aa3.36□□□□□ -1.87
WHI3YNL197C SCD6P45978 349 aaKnown RBP RIP-Chip data3.36□□□□□ -1.87not detected
WHI3YNL197C YJL132WP47014 750 aa3.36□□□□□ -1.87
WHI3YNL197C SMA1Q02651 245 aa3.36□□□□□ -1.87
WHI3YNL197C YPL107WQ02873 248 aa3.36□□□□□ -1.87
WHI3YNL197C CUE5Q08412 411 aaKnown RBP3.36□□□□□ -1.87
WHI3YNL197C DCI1Q08558 271 aa3.36□□□□□ -1.87
WHI3YNL197C ARP6Q12509 438 aa3.36□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 39.4 ms