RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	RPT3	P33298	428 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	SPT10	P35208	640 aa		3.2	□□□□□ -1.9
USE1	YGL098W	JEN1	P36035	616 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YBR241C	P38142	488 aa		3.2	□□□□□ -1.9
USE1	YGL098W	APM3	P38153	483 aa		3.2	□□□□□ -1.9
USE1	YGL098W	GLO3	P38682	493 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	STB5	P38699	743 aa		3.2	□□□□□ -1.9
USE1	YGL098W	DED81	P38707	554 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	COS8	P38723	381 aa		3.2	□□□□□ -1.9
USE1	YGL098W	CYC2	P38909	366 aa		3.2	□□□□□ -1.9
USE1	YGL098W	PMC1	P38929	1173 aa	Predicted RBP	3.2	□□□□□ -1.9
USE1	YGL098W	SHU2	P38957	223 aa		3.2	□□□□□ -1.9
USE1	YGL098W	FHL1	P39521	936 aa		3.2	□□□□□ -1.9
USE1	YGL098W	GIP4	P39732	760 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RSP5	P39940	809 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	YER184C	P39961	794 aa		3.2	□□□□□ -1.9
USE1	YGL098W	SWM2	P40342	146 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YKE4	P40544	346 aa		3.2	□□□□□ -1.9
USE1	YGL098W	MRPS18	P42847	217 aa		3.2	□□□□□ -1.9
USE1	YGL098W	CAF16	P43569	289 aa		3.2	□□□□□ -1.9
USE1	YGL098W	GUF1	P46943	645 aa		3.2	□□□□□ -1.9
USE1	YGL098W	CPR7	P47103	393 aa		3.2	□□□□□ -1.9
USE1	YGL098W	MOG1	P47123	218 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YGR153W	P48238	217 aa		3.2	□□□□□ -1.9
USE1	YGL098W	TOM22	P49334	152 aa		3.2	□□□□□ -1.9
USE1	YGL098W	PPT1	P53043	513 aa		3.2	□□□□□ -1.9
USE1	YGL098W	PEX8	P53248	589 aa		3.2	□□□□□ -1.9
USE1	YGL098W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
USE1	YGL098W	GIM3	P53900	129 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YNL095C	P53932	642 aa		3.2	□□□□□ -1.9
USE1	YGL098W	HXT11	P54862	567 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RPS15	Q01855	142 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	YPL107W	Q02873	248 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RRN5	Q02983	363 aa		3.2	□□□□□ -1.9
USE1	YGL098W	EFR3	Q03653	782 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	PPN1	Q04119	674 aa		3.2	□□□□□ -1.9
USE1	YGL098W	DPB4	Q04603	196 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	CSM3	Q04659	317 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RQC1	Q05468	723 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	EMG1	Q06287	252 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	MHR1	Q06630	226 aa		3.2	□□□□□ -1.9
USE1	YGL098W	UBX5	Q06682	500 aa		3.2	□□□□□ -1.9
USE1	YGL098W	GRS2	Q06817	618 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YET3	Q07451	203 aa		3.2	□□□□□ -1.9
USE1	YGL098W	THI73	Q07904	523 aa		3.2	□□□□□ -1.9
USE1	YGL098W	NBA1	Q08229	501 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	PPM2	Q08282	695 aa		3.2	□□□□□ -1.9
USE1	YGL098W	KEL3	Q08979	651 aa	Predicted RBP	3.2	□□□□□ -1.9
USE1	YGL098W	AEP3	Q12089	606 aa		3.2	□□□□□ -1.9
USE1	YGL098W	NSL1	Q12143	216 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YPR063C	Q12160	140 aa		3.2	□□□□□ -1.9
USE1	YGL098W	ATP14	Q12349	124 aa		3.2	□□□□□ -1.9
USE1	YGL098W	DGK1	Q12382	290 aa		3.2	□□□□□ -1.9
USE1	YGL098W	TRM10	Q12400	293 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YOR019W	Q99248	730 aa		3.2	□□□□□ -1.9
USE1	YGL098W	REP2	P03872	296 aa		3.19	□□□□□ -1.9
USE1	YGL098W	ARG3	P05150	338 aa		3.19	□□□□□ -1.9
USE1	YGL098W	FUR4	P05316	633 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	ARO3	P14843	370 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	CDC23	P16522	626 aa		3.19	□□□□□ -1.9
USE1	YGL098W	UGA1	P17649	471 aa		3.19	□□□□□ -1.9
USE1	YGL098W	COQ1	P18900	473 aa		3.19	□□□□□ -1.9
USE1	YGL098W	SIR1	P21691	654 aa		3.19	□□□□□ -1.9
USE1	YGL098W	MAK31	P23059	88 aa		3.19	□□□□□ -1.9
USE1	YGL098W	YCK1	P23291	538 aa		3.19	□□□□□ -1.9
USE1	YGL098W	VMA3	P25515	160 aa		3.19	□□□□□ -1.9
USE1	YGL098W	PGS1	P25578	521 aa		3.19	□□□□□ -1.9
USE1	YGL098W	CIN8	P27895	1000 aa		3.19	□□□□□ -1.9
USE1	YGL098W	URA7	P28274	579 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	APE2	P32454	952 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	SRB6	P32570	121 aa		3.19	□□□□□ -1.9
USE1	YGL098W	SIP1	P32578	815 aa		3.19	□□□□□ -1.9
USE1	YGL098W	UTR4	P32626	227 aa		3.19	□□□□□ -1.9
USE1	YGL098W	SKG6	P32900	734 aa	Predicted RBP	3.19	□□□□□ -1.9
USE1	YGL098W	SRP102	P36057	244 aa	Predicted RBP	3.19	□□□□□ -1.9
USE1	YGL098W	RIM2	P38127	377 aa		3.19	□□□□□ -1.9
USE1	YGL098W	GPX2	P38143	162 aa		3.19	□□□□□ -1.9
USE1	YGL098W	NCL1	P38205	684 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	ALG14	P38242	237 aa		3.19	□□□□□ -1.9
USE1	YGL098W	YBR137W	P38276	179 aa		3.19	□□□□□ -1.9
USE1	YGL098W	COS111	P38308	924 aa		3.19	□□□□□ -1.9
USE1	YGL098W	ARN2	P38724	620 aa		3.19	□□□□□ -1.9
USE1	YGL098W	NEM1	P38757	446 aa		3.19	□□□□□ -1.9
USE1	YGL098W	YHK8	P38776	514 aa		3.19	□□□□□ -1.9
USE1	YGL098W	FSH1	P38777	243 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	LYS9	P38999	446 aa		3.19	□□□□□ -1.9
USE1	YGL098W	YEL020C	P39994	560 aa		3.19	□□□□□ -1.9
USE1	YGL098W	MIT1	P40002	666 aa		3.19	□□□□□ -1.9
USE1	YGL098W	TPA1	P40032	644 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	LSM4	P40070	187 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	FMP10	P40098	244 aa		3.19	□□□□□ -1.9
USE1	YGL098W	ASG1	P40467	964 aa		3.19	□□□□□ -1.9
USE1	YGL098W	CHS6	P40955	746 aa		3.19	□□□□□ -1.9
USE1	YGL098W	CIN1	P40987	1014 aa		3.19	□□□□□ -1.9
USE1	YGL098W	ERG10	P41338	398 aa	Known RBP	3.19	□□□□□ -1.9
USE1	YGL098W	ALR2	P43553	858 aa		3.19	□□□□□ -1.9
USE1	YGL098W	RET2	P43621	546 aa		3.19	□□□□□ -1.9
USE1	YGL098W	HLJ1	P48353	224 aa		3.19	□□□□□ -1.9
USE1	YGL098W	SPT20	P50875	604 aa		3.19	□□□□□ -1.9
USE1	YGL098W	YGR026W	P53217	278 aa		3.19	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 21.4 ms