RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C LDB19Q12502 818 aa3.63□□□□□ -1.83
DNL4YOR005C CLB5P30283 435 aa3.63□□□□□ -1.83
DNL4YOR005C EAP1P36041 632 aaKnown RBP3.63□□□□□ -1.83
DNL4YOR005C HAT1Q12341 374 aa3.63□□□□□ -1.83
DNL4YOR005C NIS1P53939 407 aa3.62□□□□□ -1.83
DNL4YOR005C MRX10Q05648 414 aa3.62□□□□□ -1.83
DNL4YOR005C BMT6Q12291 365 aa3.62□□□□□ -1.83
DNL4YOR005C SIS2P36024 562 aa3.62□□□□□ -1.83
DNL4YOR005C FPK1P53739 893 aa3.62□□□□□ -1.83
DNL4YOR005C SET4P42948 560 aa3.62□□□□□ -1.83
DNL4YOR005C ENO1P00924 437 aaKnown RBP3.61□□□□□ -1.83
DNL4YOR005C MVP1P40959 511 aaKnown RBP3.61□□□□□ -1.83
DNL4YOR005C TFG1P41895 735 aaPredicted RBP3.61□□□□□ -1.83
DNL4YOR005C ENO2P00925 437 aaKnown RBP3.61□□□□□ -1.83
DNL4YOR005C NST1P53935 1240 aa3.61□□□□□ -1.83
DNL4YOR005C PKH3Q03306 898 aaPredicted RBP3.61□□□□□ -1.83
DNL4YOR005C MMP1Q12372 583 aa3.61□□□□□ -1.83
DNL4YOR005C GAP1P19145 602 aaPredicted RBP3.6□□□□□ -1.83
DNL4YOR005C SAM3Q08986 587 aa3.6□□□□□ -1.83
DNL4YOR005C MSB4Q12317 492 aa3.6□□□□□ -1.83
DNL4YOR005C BNI1P41832 1953 aa3.6□□□□□ -1.83
DNL4YOR005C LTE1P07866 1435 aa3.6□□□□□ -1.83
DNL4YOR005C ESS1P22696 170 aa3.6□□□□□ -1.83
DNL4YOR005C SCJ1P25303 377 aa3.6□□□□□ -1.83
DNL4YOR005C SPT5P27692 1063 aaKnown RBP3.6□□□□□ -1.83
DNL4YOR005C TGL4P36165 910 aa3.6□□□□□ -1.83
DNL4YOR005C YTA7P40340 1379 aa3.59□□□□□ -1.83
DNL4YOR005C STM1P39015 273 aaKnown RBP3.59□□□□□ -1.83
DNL4YOR005C RIM21P48565 533 aa3.59□□□□□ -1.83
DNL4YOR005C THO2P53552 1597 aaKnown RBP3.59□□□□□ -1.83
DNL4YOR005C YDJ1P25491 409 aaKnown RBP3.59□□□□□ -1.84
DNL4YOR005C YJU3P28321 313 aa3.59□□□□□ -1.84
DNL4YOR005C ASF1P32447 279 aa3.59□□□□□ -1.84
DNL4YOR005C OCA5P38738 679 aa3.59□□□□□ -1.84
DNL4YOR005C DAN4P47179 1161 aa3.59□□□□□ -1.84
DNL4YOR005C YOR093CQ12275 1648 aa3.58□□□□□ -1.84
DNL4YOR005C SIT4P20604 311 aa3.58□□□□□ -1.84
DNL4YOR005C IPL1P38991 367 aa3.58□□□□□ -1.84
DNL4YOR005C YMR196WQ04336 1088 aa3.58□□□□□ -1.84
DNL4YOR005C ESC1Q03661 1658 aaKnown RBP3.58□□□□□ -1.84
DNL4YOR005C RTG1P32607 177 aa3.58□□□□□ -1.84
DNL4YOR005C PEP12P32854 288 aa3.58□□□□□ -1.84
DNL4YOR005C RSC30P38781 883 aa3.58□□□□□ -1.84
DNL4YOR005C YOL036WQ08206 761 aa3.58□□□□□ -1.84
DNL4YOR005C ITT1Q04638 464 aa3.57□□□□□ -1.84
DNL4YOR005C RRP15Q06511 250 aaPredicted RBP3.57□□□□□ -1.84
DNL4YOR005C SSK2P53599 1579 aa3.57□□□□□ -1.84
DNL4YOR005C MAK16P10962 306 aaPredicted RBP3.57□□□□□ -1.84
DNL4YOR005C SEC20P28791 383 aa3.57□□□□□ -1.84
DNL4YOR005C NCR1Q12200 1170 aa3.57□□□□□ -1.84
DNL4YOR005C ARG8P18544 423 aa3.57□□□□□ -1.84
DNL4YOR005C ALD2P47771 506 aa3.57□□□□□ -1.84
DNL4YOR005C YPR109WQ06104 294 aa3.57□□□□□ -1.84
DNL4YOR005C CSC1Q06538 782 aa3.57□□□□□ -1.84
DNL4YOR005C GYP5Q12344 894 aa3.57□□□□□ -1.84
DNL4YOR005C YBL113CQ7M4S9 792 aa3.57□□□□□ -1.84
DNL4YOR005C PEP1P32319 1579 aa3.56□□□□□ -1.84
DNL4YOR005C MSC6Q08818 692 aaKnown RBP3.56□□□□□ -1.84
DNL4YOR005C SKI3P17883 1432 aaKnown RBP3.56□□□□□ -1.84
DNL4YOR005C TRP5P00931 707 aaKnown RBP3.56□□□□□ -1.84
DNL4YOR005C ERP5P38819 212 aa3.56□□□□□ -1.84
DNL4YOR005C ILV3P39522 585 aaKnown RBP3.56□□□□□ -1.84
DNL4YOR005C DOS2P54858 310 aa3.56□□□□□ -1.84
DNL4YOR005C MPH3P0CE00 602 aa3.55□□□□□ -1.84
DNL4YOR005C AI4P03878 556 aa3.55□□□□□ -1.84
DNL4YOR005C RDS2P19541 446 aaKnown RBP3.55□□□□□ -1.84
DNL4YOR005C BRN1P38170 754 aa3.55□□□□□ -1.84
DNL4YOR005C TRL1P09880 827 aaKnown RBP3.54□□□□□ -1.84
DNL4YOR005C YNL035CP53962 389 aaKnown RBP3.54□□□□□ -1.84
DNL4YOR005C YPP1P46951 817 aa3.54□□□□□ -1.84
DNL4YOR005C ECM23Q02710 187 aa3.54□□□□□ -1.84
DNL4YOR005C LAM6Q08001 693 aa3.54□□□□□ -1.84
DNL4YOR005C NAF1P53919 492 aaKnown RBP3.53□□□□□ -1.84
DNL4YOR005C ATE1P16639 503 aa3.53□□□□□ -1.84
DNL4YOR005C SPC42P36094 363 aa3.53□□□□□ -1.84
DNL4YOR005C SVF1Q05515 481 aa3.53□□□□□ -1.84
DNL4YOR005C TFB4Q12004 338 aa3.53□□□□□ -1.84
DNL4YOR005C SLI15P38283 698 aa3.52□□□□□ -1.85
DNL4YOR005C GAL2P13181 574 aa3.52□□□□□ -1.85
DNL4YOR005C TPS3P38426 1054 aaKnown RBP3.52□□□□□ -1.85
DNL4YOR005C MDJ2P42834 146 aa3.52□□□□□ -1.85
DNL4YOR005C NNF1P47149 201 aa3.52□□□□□ -1.85
DNL4YOR005C CWC15Q03772 175 aaKnown RBP3.52□□□□□ -1.85
DNL4YOR005C SEC61P32915 480 aa3.52□□□□□ -1.85
DNL4YOR005C DCW1P36091 449 aa3.52□□□□□ -1.85
DNL4YOR005C PPX1P38698 397 aa3.52□□□□□ -1.85
DNL4YOR005C YHL050CP38721 697 aa3.52□□□□□ -1.85
DNL4YOR005C YHR219WP38900 624 aa3.52□□□□□ -1.85
DNL4YOR005C POL32P47110 350 aa3.52□□□□□ -1.85
DNL4YOR005C FAR11P53917 953 aa3.52□□□□□ -1.85
DNL4YOR005C FPR4Q06205 392 aaPredicted RBP3.52□□□□□ -1.85
DNL4YOR005C MCM16Q12262 181 aa3.52□□□□□ -1.85
DNL4YOR005C YEL077CQ3E7X8 1277 aa3.52□□□□□ -1.85
DNL4YOR005C RPA190P10964 1664 aaKnown RBP3.51□□□□□ -1.85
DNL4YOR005C RPP1BP10622 106 aaKnown RBP3.51□□□□□ -1.85
DNL4YOR005C SLY41P22215 453 aa3.51□□□□□ -1.85
DNL4YOR005C UBX7P38349 436 aa3.51□□□□□ -1.85
DNL4YOR005C KTR7P40504 517 aa3.51□□□□□ -1.85
DNL4YOR005C BUB1P41695 1021 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
DNL4YOR005C KAR5Q04746 504 aa3.51□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms