RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DNL4	YOR005C	DRS1	P32892	752 aa	Known RBP	6.14	□□□□□ -1.43
DNL4	YOR005C	MTC1	P47018	478 aa	Known RBP	5.88	□□□□□ -1.47
DNL4	YOR005C	FAP1	P53971	965 aa		5.6	□□□□□ -1.51
DNL4	YOR005C	TFA1	P36100	482 aa		5.55	□□□□□ -1.52
DNL4	YOR005C	BFR2	Q06631	534 aa	Known RBP	5.52	□□□□□ -1.53
DNL4	YOR005C	PRY3	P47033	881 aa		5.24	□□□□□ -1.57
DNL4	YOR005C	AVT3	P36062	692 aa		5.18	□□□□□ -1.58
DNL4	YOR005C	RQC2	Q12532	1038 aa	Known RBP	5.14	□□□□□ -1.59
DNL4	YOR005C	YCK3	P39962	524 aa		5.13	□□□□□ -1.59
DNL4	YOR005C	PRI1	P10363	409 aa		5.11	□□□□□ -1.59
DNL4	YOR005C	DIP2	Q12220	943 aa	Predicted RBP	5.09	□□□□□ -1.6
DNL4	YOR005C	AAD16	Q02895	342 aa		5.07	□□□□□ -1.6
DNL4	YOR005C	ISW2	Q08773	1120 aa		4.97	□□□□□ -1.61
DNL4	YOR005C	RPG1	P38249	964 aa	Known RBP	4.89	□□□□□ -1.63
DNL4	YOR005C	HAA1	Q12753	694 aa	Known RBP	4.87	□□□□□ -1.63
DNL4	YOR005C	TAF7	Q05021	590 aa		4.81	□□□□□ -1.64
DNL4	YOR005C	TSR3	Q12094	313 aa	Known RBP	4.79	□□□□□ -1.64
DNL4	YOR005C	MON2	P48563	1636 aa	Predicted RBP	4.79	□□□□□ -1.64
DNL4	YOR005C	DMA1	P38823	416 aa		4.72	□□□□□ -1.65
DNL4	YOR005C	RSE1	Q04693	1361 aa	Known RBP	4.67	□□□□□ -1.66
DNL4	YOR005C	MRPL32	P25348	183 aa		4.66	□□□□□ -1.66
DNL4	YOR005C	REB1	P21538	810 aa		4.58	□□□□□ -1.68
DNL4	YOR005C	LEO1	P38439	464 aa		4.58	□□□□□ -1.68
DNL4	YOR005C	RPL17A	P05740	184 aa	Known RBP	4.54	□□□□□ -1.68
DNL4	YOR005C	RPL17B	P46990	184 aa	Known RBP	4.54	□□□□□ -1.68
DNL4	YOR005C	PTP3	P40048	928 aa		4.5	□□□□□ -1.69
DNL4	YOR005C	YGL015C	P33199	130 aa		4.47	□□□□□ -1.69
DNL4	YOR005C	RIM101	P33400	625 aa		4.41	□□□□□ -1.7
DNL4	YOR005C	SPT21	P35209	758 aa		4.4	□□□□□ -1.7
DNL4	YOR005C	MIF2	P35201	549 aa		4.4	□□□□□ -1.71
DNL4	YOR005C	CDC27	P38042	758 aa		4.4	□□□□□ -1.71
DNL4	YOR005C	SSP1	P38871	571 aa		4.4	□□□□□ -1.71
DNL4	YOR005C	YKR023W	P36119	530 aa	Known RBP	4.39	□□□□□ -1.71
DNL4	YOR005C	LEU3	P08638	886 aa		4.38	□□□□□ -1.71
DNL4	YOR005C	SPA2	P23201	1466 aa	Known RBP	4.37	□□□□□ -1.71
DNL4	YOR005C	SAS10	Q12136	610 aa	Predicted RBP	4.37	□□□□□ -1.71
DNL4	YOR005C	INO80	P53115	1489 aa		4.33	□□□□□ -1.72
DNL4	YOR005C	KOG1	P38873	1557 aa		4.3	□□□□□ -1.72
DNL4	YOR005C	OXP1	P28273	1286 aa		4.29	□□□□□ -1.72
DNL4	YOR005C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.27	□□□□□ -1.73	not detected
DNL4	YOR005C	YLR271W	Q06152	274 aa		4.24	□□□□□ -1.73
DNL4	YOR005C	TFC8	Q12308	588 aa		4.24	□□□□□ -1.73
DNL4	YOR005C	YAH1	Q12184	172 aa	Known RBP	4.23	□□□□□ -1.73
DNL4	YOR005C	DMA2	P53924	522 aa		4.22	□□□□□ -1.73
DNL4	YOR005C	MAP2	P38174	421 aa	Known RBP	4.22	□□□□□ -1.73
DNL4	YOR005C	RPN1	P38764	993 aa	Known RBP	4.22	□□□□□ -1.73
DNL4	YOR005C	UBP10	P53874	792 aa	Predicted RBP	4.2	□□□□□ -1.74
DNL4	YOR005C	DCD1	P06773	312 aa		4.2	□□□□□ -1.74
DNL4	YOR005C	HO	P09932	586 aa		4.2	□□□□□ -1.74
DNL4	YOR005C	MGA2	P40578	1113 aa		4.2	□□□□□ -1.74
DNL4	YOR005C	DNA2	P38859	1522 aa		4.19	□□□□□ -1.74
DNL4	YOR005C	YIL055C	P40523	627 aa	Known RBP	4.18	□□□□□ -1.74
DNL4	YOR005C	BUD31	P25337	157 aa	Predicted RBP	4.17	□□□□□ -1.74
DNL4	YOR005C	ABP1	P15891	592 aa	Known RBP	4.16	□□□□□ -1.74
DNL4	YOR005C	RSM7	P47150	247 aa		4.14	□□□□□ -1.75
DNL4	YOR005C	CST9	Q06032	482 aa		4.13	□□□□□ -1.75
DNL4	YOR005C	RLF2	Q12495	606 aa		4.13	□□□□□ -1.75
DNL4	YOR005C	SCY1	P53009	804 aa		4.13	□□□□□ -1.75
DNL4	YOR005C	TIF4632	P39936	914 aa	Known RBP	4.12	□□□□□ -1.75
DNL4	YOR005C	CKB1	P43639	278 aa		4.11	□□□□□ -1.75
DNL4	YOR005C	BCH2	P36122	765 aa		4.1	□□□□□ -1.75
DNL4	YOR005C	SLX5	P32828	619 aa	Known RBP	4.09	□□□□□ -1.75
DNL4	YOR005C	PSD2	P53037	1138 aa	Known RBP	4.09	□□□□□ -1.75
DNL4	YOR005C	YPR148C	Q06523	435 aa		4.08	□□□□□ -1.76
DNL4	YOR005C	SWR1	Q05471	1514 aa		4.08	□□□□□ -1.76
DNL4	YOR005C	SPB4	P25808	606 aa	Predicted RBP	4.08	□□□□□ -1.76
DNL4	YOR005C	SET1	P38827	1080 aa	Known RBP	4.06	□□□□□ -1.76
DNL4	YOR005C	RAM2	P29703	316 aa		4.05	□□□□□ -1.76
DNL4	YOR005C	UBP9	P39967	754 aa		4.05	□□□□□ -1.76
DNL4	YOR005C	VPS70	P47161	811 aa		4.04	□□□□□ -1.76
DNL4	YOR005C	TGL3	P40308	642 aa		4.04	□□□□□ -1.76
DNL4	YOR005C	AI2	P03876	854 aa		4.03	□□□□□ -1.76
DNL4	YOR005C	SIS1	P25294	352 aa	Known RBP	4.03	□□□□□ -1.76
DNL4	YOR005C	IFH1	P39520	1085 aa		4.02	□□□□□ -1.77
DNL4	YOR005C	DSF2	P38213	736 aa		4.02	□□□□□ -1.77
DNL4	YOR005C	KIN1	P13185	1064 aa		3.99	□□□□□ -1.77
DNL4	YOR005C	YNR021W	P53723	404 aa	Known RBP	3.99	□□□□□ -1.77
DNL4	YOR005C	MST1	P07236	462 aa		3.98	□□□□□ -1.77
DNL4	YOR005C	PBS2	P08018	668 aa		3.97	□□□□□ -1.77
DNL4	YOR005C	BDF1	P35817	686 aa		3.96	□□□□□ -1.78
DNL4	YOR005C	RCR1	P38212	213 aa		3.95	□□□□□ -1.78
DNL4	YOR005C	BBC1	P47068	1157 aa		3.95	□□□□□ -1.78
DNL4	YOR005C	AIM7	Q12156	149 aa		3.95	□□□□□ -1.78
DNL4	YOR005C	HGH1	P48362	394 aa	Known RBP	3.94	□□□□□ -1.78
DNL4	YOR005C	MAK11	P20484	414 aa	Known RBP	3.94	□□□□□ -1.78
DNL4	YOR005C	YFR006W	P43590	535 aa		3.94	□□□□□ -1.78
DNL4	YOR005C	GLC3	P32775	704 aa		3.93	□□□□□ -1.78
DNL4	YOR005C	EPS1	P40557	701 aa		3.93	□□□□□ -1.78
DNL4	YOR005C	MRM1	P25270	412 aa		3.92	□□□□□ -1.78
DNL4	YOR005C	GUA1	P38625	525 aa	Known RBP	3.91	□□□□□ -1.78
DNL4	YOR005C	MAM3	Q12296	706 aa		3.91	□□□□□ -1.78
DNL4	YOR005C	RTG3	P38165	486 aa		3.9	□□□□□ -1.78
DNL4	YOR005C	NUP42	P49686	430 aa	Known RBP	3.9	□□□□□ -1.78
DNL4	YOR005C	DIT2	P21595	489 aa		3.9	□□□□□ -1.79
DNL4	YOR005C	NOP8	Q08287	484 aa	Predicted RBP	3.89	□□□□□ -1.79
DNL4	YOR005C	IES2	P40154	320 aa		3.89	□□□□□ -1.79
DNL4	YOR005C	YML020W	Q03722	664 aa		3.89	□□□□□ -1.79
DNL4	YOR005C	NOP53	Q12080	455 aa	Known RBP	3.89	□□□□□ -1.79
DNL4	YOR005C	REF2	P42073	533 aa	Predicted RBP	3.88	□□□□□ -1.79
DNL4	YOR005C	HPC2	Q01448	625 aa		3.88	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 9.9 ms