RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W YIL060WP40519 144 aa5.62□□□□□ -1.51
PRP40YKL012W ATP23P53722 227 aa5.62□□□□□ -1.51
PRP40YKL012W MMR1Q06324 491 aa5.62□□□□□ -1.51
PRP40YKL012W PFA4Q12006 378 aa5.62□□□□□ -1.51
PRP40YKL012W HIP1P06775 603 aa5.62□□□□□ -1.51
PRP40YKL012W AFG1P32317 509 aa5.62□□□□□ -1.51
PRP40YKL012W RPN2P32565 945 aaKnown RBP5.62□□□□□ -1.51
PRP40YKL012W HEL1P36113 551 aa5.62□□□□□ -1.51
PRP40YKL012W HXT9P40885 567 aa5.62□□□□□ -1.51
PRP40YKL012W SNG1P46950 547 aa5.62□□□□□ -1.51
PRP40YKL012W HEF3P53978 1044 aaKnown RBP5.62□□□□□ -1.51
PRP40YKL012W HEL2Q05580 639 aaKnown RBP5.62□□□□□ -1.51
PRP40YKL012W DCI1Q08558 271 aa5.62□□□□□ -1.51
PRP40YKL012W UAF30Q08747 228 aa5.62□□□□□ -1.51
PRP40YKL012W YKL023WP36103 277 aaKnown RBP5.61□□□□□ -1.51
PRP40YKL012W ACL4Q03771 387 aa5.61□□□□□ -1.51
PRP40YKL012W ARP10Q04549 284 aa5.61□□□□□ -1.51
PRP40YKL012W THP1Q08231 455 aa5.61□□□□□ -1.51
PRP40YKL012W CUE5Q08412 411 aaKnown RBP5.61□□□□□ -1.51
PRP40YKL012W VPS54Q12071 889 aa5.61□□□□□ -1.51
PRP40YKL012W PUF2Q12221 1075 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
PRP40YKL012W FRE6Q12473 712 aa5.61□□□□□ -1.51
PRP40YKL012W DUG3P53871 357 aa5.6□□□□□ -1.51
PRP40YKL012W YPL107WQ02873 248 aa5.6□□□□□ -1.51
PRP40YKL012W YOR365CQ08844 703 aa5.6□□□□□ -1.51
PRP40YKL012W RAV1P47104 1357 aa5.6□□□□□ -1.51
PRP40YKL012W RHO2P06781 192 aa5.6□□□□□ -1.51
PRP40YKL012W RPL1AP0CX43 217 aaKnown RBP5.6□□□□□ -1.51
PRP40YKL012W RPL1BP0CX44 217 aaKnown RBP5.6□□□□□ -1.51
PRP40YKL012W ILV6P25605 309 aaKnown RBP5.6□□□□□ -1.51
PRP40YKL012W SWH1P35845 1188 aa5.6□□□□□ -1.51
PRP40YKL012W ROT2P38138 954 aa5.6□□□□□ -1.51
PRP40YKL012W TCM62P38228 572 aaKnown RBP5.6□□□□□ -1.51
PRP40YKL012W DRN1P53255 507 aaKnown RBP5.6□□□□□ -1.51
PRP40YKL012W EOS1P53938 366 aa5.6□□□□□ -1.51
PRP40YKL012W NFI1Q12216 726 aa5.6□□□□□ -1.51
PRP40YKL012W BRR1Q99177 341 aaPredicted RBP5.6□□□□□ -1.51
PRP40YKL012W GPH1P06738 902 aaKnown RBP5.59□□□□□ -1.51
PRP40YKL012W URE2P23202 354 aaKnown RBP5.59□□□□□ -1.51
PRP40YKL012W CNA1P23287 553 aa5.59□□□□□ -1.51
PRP40YKL012W COQ3P27680 312 aa5.59□□□□□ -1.51
PRP40YKL012W STV1P37296 890 aa5.59□□□□□ -1.51
PRP40YKL012W ARA1P38115 344 aa5.59□□□□□ -1.51
PRP40YKL012W TIF4631P39935 952 aaKnown RBP5.59□□□□□ -1.51
PRP40YKL012W PKP2P53170 491 aa5.59□□□□□ -1.51
PRP40YKL012W RPT4P53549 437 aaKnown RBP5.59□□□□□ -1.51
PRP40YKL012W CAC2Q04199 468 aa5.59□□□□□ -1.51
PRP40YKL012W CFT2Q12102 859 aaPredicted RBP5.59□□□□□ -1.51
PRP40YKL012W RRI1Q12468 440 aa5.59□□□□□ -1.51
PRP40YKL012W URA4P20051 364 aa5.58□□□□□ -1.52
PRP40YKL012W RPB8P20436 146 aa5.58□□□□□ -1.52
PRP40YKL012W PPZ2P33329 710 aa5.58□□□□□ -1.52
PRP40YKL012W BNA4P38169 460 aa5.58□□□□□ -1.52
PRP40YKL012W PHO90P39535 881 aa5.58□□□□□ -1.52
PRP40YKL012W SER3P40054 469 aa5.58□□□□□ -1.52
PRP40YKL012W YMR147WP40218 223 aaKnown RBP5.58□□□□□ -1.52
PRP40YKL012W SMM1P53720 384 aaKnown RBP5.58□□□□□ -1.52
PRP40YKL012W YVH1Q02256 364 aaKnown RBP5.58□□□□□ -1.52
PRP40YKL012W SHR3Q02774 210 aa5.58□□□□□ -1.52
PRP40YKL012W OSW1Q08692 278 aa5.58□□□□□ -1.52
PRP40YKL012W FRE7Q12333 620 aa5.58□□□□□ -1.52
PRP40YKL012W LPD1P09624 499 aaKnown RBP5.57□□□□□ -1.52
PRP40YKL012W PEP5P12868 1029 aa5.57□□□□□ -1.52
PRP40YKL012W SPO7P18410 259 aa5.57□□□□□ -1.52
PRP40YKL012W KEL1P38853 1164 aaKnown RBP5.57□□□□□ -1.52
PRP40YKL012W NMD5P46970 1048 aa5.57□□□□□ -1.52
PRP40YKL012W PRP42Q03776 544 aaKnown RBP5.57□□□□□ -1.52
PRP40YKL012W MCP2Q06567 569 aa5.57□□□□□ -1.52
PRP40YKL012W MED2Q12124 431 aa5.57□□□□□ -1.52
PRP40YKL012W VAM3Q12241 283 aa5.57□□□□□ -1.52
PRP40YKL012W GAL4P04386 881 aa5.57□□□□□ -1.52
PRP40YKL012W RAD52P06778 471 aaKnown RBP5.57□□□□□ -1.52
PRP40YKL012W SRV2P17555 526 aaKnown RBP5.57□□□□□ -1.52
PRP40YKL012W CLN1P20437 546 aa5.57□□□□□ -1.52
PRP40YKL012W BRF1P29056 596 aa5.57□□□□□ -1.52
PRP40YKL012W LAG1P38703 411 aa5.57□□□□□ -1.52
PRP40YKL012W ECM27P47144 725 aa5.57□□□□□ -1.52
PRP40YKL012W YJR154WP47181 346 aa5.57□□□□□ -1.52
PRP40YKL012W ZPR1P53303 486 aaKnown RBP5.57□□□□□ -1.52
PRP40YKL012W YMR130WQ04223 302 aa5.57□□□□□ -1.52
PRP40YKL012W YDL218WQ07629 317 aa5.57□□□□□ -1.52
PRP40YKL012W YLL032CQ07834 825 aaKnown RBP RIP-Chip data5.57□□□□□ -1.52not detected
PRP40YKL012W RDR1Q08904 546 aa5.57□□□□□ -1.52
PRP40YKL012W LAS1P36146 502 aaPredicted RBP5.56□□□□□ -1.52
PRP40YKL012W FLO10P36170 1169 aa5.56□□□□□ -1.52
PRP40YKL012W DUG2P38149 878 aa5.56□□□□□ -1.52
PRP40YKL012W LEU5P38702 357 aa5.56□□□□□ -1.52
PRP40YKL012W YJL132WP47014 750 aa5.56□□□□□ -1.52
PRP40YKL012W OCA1P50946 238 aaPredicted RBP5.56□□□□□ -1.52
PRP40YKL012W SOL4P53315 255 aa5.56□□□□□ -1.52
PRP40YKL012W BUD32P53323 261 aa5.56□□□□□ -1.52
PRP40YKL012W IDP3P53982 420 aaKnown RBP5.56□□□□□ -1.52
PRP40YKL012W APL5Q08951 932 aaKnown RBP5.56□□□□□ -1.52
PRP40YKL012W KEL3Q08979 651 aaPredicted RBP5.56□□□□□ -1.52
PRP40YKL012W AEP3Q12089 606 aa5.56□□□□□ -1.52
PRP40YKL012W RIP1P08067 215 aa5.55□□□□□ -1.52
PRP40YKL012W TUB1P09733 447 aaKnown RBP5.55□□□□□ -1.52
PRP40YKL012W YMR085WP0CF18 432 aa5.55□□□□□ -1.52
PRP40YKL012W SGV1P23293 657 aaKnown RBP5.55□□□□□ -1.52
PRP40YKL012W POT1P27796 417 aaKnown RBP RIP-Chip data5.55□□□□□ -1.52not detected
Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms