RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C LUC7Q07508 261 aaPredicted RBP1.98□□□□□ -2.09
PCF11YDR228C SPE4Q12455 300 aa1.98□□□□□ -2.09
PCF11YDR228C FUM1P08417 488 aaKnown RBP1.97□□□□□ -2.09
PCF11YDR228C YME1P32795 747 aa1.97□□□□□ -2.09
PCF11YDR228C MAL33P38157 468 aa1.97□□□□□ -2.09
PCF11YDR228C ICS2P38284 255 aa1.97□□□□□ -2.09
PCF11YDR228C SDT1P53078 280 aa1.97□□□□□ -2.09
PCF11YDR228C RAD30Q04049 632 aa1.97□□□□□ -2.09
PCF11YDR228C YKU80Q04437 629 aa1.97□□□□□ -2.09
PCF11YDR228C MHR1Q06630 226 aa1.97□□□□□ -2.09
PCF11YDR228C TMS1Q12116 473 aa1.97□□□□□ -2.09
PCF11YDR228C LSP1Q12230 341 aaKnown RBP1.97□□□□□ -2.09
PCF11YDR228C MF(ALPHA)1P01149 165 aa1.97□□□□□ -2.09
PCF11YDR228C SUP35P05453 685 aaKnown RBP1.97□□□□□ -2.09
PCF11YDR228C YGR210CP42942 411 aa1.97□□□□□ -2.09
PCF11YDR228C GWT1P47026 490 aa1.97□□□□□ -2.09
PCF11YDR228C CBK1P53894 756 aa1.97□□□□□ -2.09
PCF11YDR228C ARK1P53974 638 aa1.97□□□□□ -2.09
PCF11YDR228C IVY1Q04934 453 aa1.97□□□□□ -2.09
PCF11YDR228C PHO92Q06390 306 aa1.97□□□□□ -2.09
PCF11YDR228C HIP1P06775 603 aa1.96□□□□□ -2.1
PCF11YDR228C CDC24P11433 854 aaPredicted RBP1.96□□□□□ -2.1
PCF11YDR228C SUI2P20459 304 aaKnown RBP1.96□□□□□ -2.1
PCF11YDR228C DUG2P38149 878 aa1.96□□□□□ -2.1
PCF11YDR228C CCT6P39079 546 aa1.96□□□□□ -2.1
PCF11YDR228C REE1P40893 198 aa1.96□□□□□ -2.1
PCF11YDR228C YSA1Q01976 231 aa1.96□□□□□ -2.1
PCF11YDR228C ELP3Q02908 557 aaKnown RBP1.96□□□□□ -2.1
PCF11YDR228C PAL1Q05518 499 aaKnown RBP1.96□□□□□ -2.1
PCF11YDR228C YDL057WQ07379 328 aa1.96□□□□□ -2.1
PCF11YDR228C KEL3Q08979 651 aaPredicted RBP1.96□□□□□ -2.1
PCF11YDR228C SOD1P00445 154 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C HEM15P16622 393 aa1.95□□□□□ -2.1
PCF11YDR228C EXO70P19658 623 aa1.95□□□□□ -2.1
PCF11YDR228C ELO2P25358 347 aa1.95□□□□□ -2.1
PCF11YDR228C MRS6P32864 603 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C SRO77P38163 1010 aa1.95□□□□□ -2.1
PCF11YDR228C TCM62P38228 572 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C TIF4631P39935 952 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C TPM2P40414 161 aa1.95□□□□□ -2.1
PCF11YDR228C DPH1P40487 425 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C YGL039WP53183 348 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C BSC5P53755 489 aa1.95□□□□□ -2.1
PCF11YDR228C YLR152CP54072 576 aa1.95□□□□□ -2.1
PCF11YDR228C ATG16Q03818 150 aa1.95□□□□□ -2.1
PCF11YDR228C RRN11Q04712 507 aa1.95□□□□□ -2.1
PCF11YDR228C RBS1Q05672 457 aaKnown RBP1.95□□□□□ -2.1
PCF11YDR228C HSH49Q99181 213 aaPredicted RBP1.95□□□□□ -2.1
PCF11YDR228C CHS1P08004 1131 aa1.94□□□□□ -2.1
PCF11YDR228C CPR1P14832 162 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C YIH1P25637 258 aa1.94□□□□□ -2.1
PCF11YDR228C DEG1P31115 442 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C MSN2P33748 704 aa1.94□□□□□ -2.1
PCF11YDR228C YBL059WP34224 193 aa1.94□□□□□ -2.1
PCF11YDR228C GCD10P41814 478 aa1.94□□□□□ -2.1
PCF11YDR228C RRT5P43607 289 aa1.94□□□□□ -2.1
PCF11YDR228C GPI1P53306 609 aa1.94□□□□□ -2.1
PCF11YDR228C TMC1Q08422 150 aaPredicted RBP1.94□□□□□ -2.1
PCF11YDR228C CFT2Q12102 859 aaPredicted RBP1.94□□□□□ -2.1
PCF11YDR228C ART10P18634 518 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C ARO2P28777 376 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C PRS1P32895 427 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C MRP4P32902 394 aa1.94□□□□□ -2.1
PCF11YDR228C MFT1P33441 392 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C PAD1P33751 242 aaKnown RBP RIP-Chip data1.94□□□□□ -2.1not detected
PCF11YDR228C SHP1P34223 423 aa1.94□□□□□ -2.1
PCF11YDR228C FAU1P40099 211 aa1.94□□□□□ -2.1
PCF11YDR228C ALK1P43633 760 aaKnown RBP1.94□□□□□ -2.1
PCF11YDR228C PBA1Q05778 276 aa1.94□□□□□ -2.1
PCF11YDR228C COQ9Q05779 260 aa1.94□□□□□ -2.1
PCF11YDR228C MRPL35Q06678 367 aa1.94□□□□□ -2.1
PCF11YDR228C RRG7Q08774 242 aaPredicted RBP1.94□□□□□ -2.1
PCF11YDR228C HRT3Q12347 344 aa1.94□□□□□ -2.1
PCF11YDR228C MRP13P12686 339 aa1.93□□□□□ -2.1
PCF11YDR228C GLK1P17709 500 aaKnown RBP1.93□□□□□ -2.1
PCF11YDR228C PRE8P23639 250 aa1.93□□□□□ -2.1
PCF11YDR228C VPS24P36095 224 aaKnown RBP1.93□□□□□ -2.1
PCF11YDR228C SWD3P38123 315 aa1.93□□□□□ -2.1
PCF11YDR228C NDT80P38830 627 aa1.93□□□□□ -2.1
PCF11YDR228C YIL067CP40514 678 aa1.93□□□□□ -2.1
PCF11YDR228C TIS11P47977 285 aa1.93□□□□□ -2.1
PCF11YDR228C TOF2Q02208 771 aa1.93□□□□□ -2.1
PCF11YDR228C YML131WQ03102 365 aa1.93□□□□□ -2.1
PCF11YDR228C BUD22Q04347 519 aaKnown RBP1.93□□□□□ -2.1
PCF11YDR228C FMP40Q08968 688 aaPredicted RBP1.93□□□□□ -2.1
PCF11YDR228C SKM1Q12469 655 aa1.93□□□□□ -2.1
PCF11YDR228C HHF1P02309 103 aaKnown RBP1.92□□□□□ -2.1
PCF11YDR228C YCK1P23291 538 aa1.92□□□□□ -2.1
PCF11YDR228C BNA4P38169 460 aa1.92□□□□□ -2.1
PCF11YDR228C ELP2P42935 788 aa1.92□□□□□ -2.1
PCF11YDR228C AIM22P47051 409 aa1.92□□□□□ -2.1
PCF11YDR228C ART5P53244 586 aaKnown RBP1.92□□□□□ -2.1
PCF11YDR228C CAF40P53829 373 aa1.92□□□□□ -2.1
PCF11YDR228C HEF3P53978 1044 aaKnown RBP1.92□□□□□ -2.1
PCF11YDR228C YML037CQ03703 340 aa1.92□□□□□ -2.1
PCF11YDR228C RPC11Q04307 110 aaPredicted RBP1.92□□□□□ -2.1
PCF11YDR228C THP1Q08231 455 aa1.92□□□□□ -2.1
PCF11YDR228C ESA1Q08649 445 aa1.92□□□□□ -2.1
PCF11YDR228C RKM5Q12367 367 aa1.92□□□□□ -2.1
PCF11YDR228C CLN3P13365 580 aa1.92□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 30 ms