RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	SNO2	P53823	222 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	AQR1	P53943	586 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	ADE16	P54113	591 aa	Known RBP	4.41	□□□□□ -1.7
SOF1	YLL011W	TOF2	Q02208	771 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	ABZ2	Q03266	374 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	RBA50	Q04418	439 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	BAG7	Q12128	409 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	TAF3	Q12297	353 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	YDR061W	Q12298	539 aa		4.41	□□□□□ -1.7
SOF1	YLL011W	YLR278C	Q05854	1341 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YLR358C	O13565	187 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	ARO3	P14843	370 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	URA4	P20051	364 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	SRP54	P20424	541 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	AMD2	P22580	549 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	CNE1	P27825	502 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	CRM1	P30822	1084 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	YME1	P32795	747 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YBR144C	P34215	104 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	PHO11	P35842	467 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	KAE1	P36132	386 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	CCL1	P37366	393 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	AAP1	P37898	856 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	PHO12	P38693	467 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	DIA4	P38705	446 aa	Predicted RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	VPS45	P38932	577 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YTA12	P40341	825 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YFL066C	P43538	392 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	ALK1	P43633	760 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	YJL132W	P47014	750 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	NET1	P47035	1189 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	MSY1	P48527	492 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	UBC11	P52492	156 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YGL138C	P53122	345 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	DIP5	P53388	608 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	DCP2	P53550	970 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	EFM6	P53970	246 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	RPS15	Q01855	142 aa	Known RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	UBP16	Q02863	499 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	ACL4	Q03771	387 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YLR224W	Q05947	369 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	YSH1	Q06224	779 aa	Predicted RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	ACK1	Q07622	623 aa	Predicted RBP	4.4	□□□□□ -1.71
SOF1	YLL011W	YDL242W	Q07746	117 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	MLH3	Q12083	715 aa		4.4	□□□□□ -1.71
SOF1	YLL011W	HXK2	P04807	486 aa	Known RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	ILV2	P07342	687 aa	Known RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	BUD5	P25300	642 aa	Predicted RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	AFG1	P32317	509 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	SPC110	P32380	944 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	HIS7	P33734	552 aa	Known RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	RPF2	P36160	344 aa	Known RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	MRPL40	P36534	297 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	PFF1	P38244	976 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	EPL1	P43572	832 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	SHE10	P53075	577 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	YIP4	P53093	235 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	BUD17	P53727	317 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	ARP5	P53946	755 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	GCN5	Q03330	439 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	DLT1	Q04216	342 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	YML053C	Q04978	212 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	RRP45	Q05636	305 aa	Known RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	YDL086W	Q07505	273 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	HBT1	Q07653	1046 aa	Known RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	MCA1	Q08601	432 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	IRC13	Q08630	104 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	YPL216W	Q08964	1102 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	PFK27	Q12471	397 aa	Predicted RBP	4.39	□□□□□ -1.71
SOF1	YLL011W	YDL007C-A	Q2V2Q0	85 aa		4.39	□□□□□ -1.71
SOF1	YLL011W	MET3	P08536	511 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	TAL1	P15019	335 aa	Known RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	ART10	P18634	518 aa	Known RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	IMG1	P25626	169 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	YIM1	P28625	365 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	HES1	P35843	434 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	GDT1	P38301	280 aa	Predicted RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	NTC20	P38302	140 aa	Predicted RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	GCD10	P41814	478 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	AGX1	P43567	385 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	DPB11	P47027	764 aa	Predicted RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	BPL1	P48445	690 aa	Predicted RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	VPS73	P53142	486 aa	Known RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	CAF130	P53280	1122 aa	Predicted RBP	4.38	□□□□□ -1.71
SOF1	YLL011W	YNL143C	P53908	130 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	YNL092W	P53934	400 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	SKO1	Q02100	647 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	VTC3	Q02725	835 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	RRN5	Q02983	363 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	USV1	Q12132	391 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	INP53	Q12271	1107 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	LAS17	Q12446	633 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	YKL033W-A	Q86ZR7	236 aa		4.38	□□□□□ -1.71
SOF1	YLL011W	PCT1	P13259	424 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	PUT4	P15380	627 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	SPO7	P18410	259 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	KGD2	P19262	463 aa	Predicted RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	CLN1	P20437	546 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	PUP3	P25451	205 aa	Known RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	LAC1	P28496	418 aa		4.37	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 227.1 ms