RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeastyeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SOF1YLL011W DRS1P32892 752 aaKnown RBP10.45□□□□□ -0.74
SOF1YLL011W MTC1P47018 478 aaKnown RBP9.51□□□□□ -0.89
SOF1YLL011W BFR2Q06631 534 aaKnown RBP9.43□□□□□ -0.9
SOF1YLL011W TFA1P36100 482 aa9.42□□□□□ -0.9
SOF1YLL011W FAP1P53971 965 aa9.38□□□□□ -0.91
SOF1YLL011W PRY3P47033 881 aa8.94□□□□□ -0.98
SOF1YLL011W RQC2Q12532 1038 aaKnown RBP8.86□□□□□ -0.99
SOF1YLL011W AVT3P36062 692 aa8.7□□□□□ -1.02
SOF1YLL011W DIP2Q12220 943 aaPredicted RBP8.59□□□□□ -1.03
SOF1YLL011W TAF7Q05021 590 aa8.32□□□□□ -1.08
SOF1YLL011W HAA1Q12753 694 aaKnown RBP8.32□□□□□ -1.08
SOF1YLL011W YCK3P39962 524 aa8.22□□□□□ -1.09
SOF1YLL011W DMA1P38823 416 aa8.14□□□□□ -1.11
SOF1YLL011W BUD31P25337 157 aaPredicted RBP7.96□□□□□ -1.13
SOF1YLL011W AAD16Q02895 342 aa7.91□□□□□ -1.14
SOF1YLL011W RSE1Q04693 1361 aaKnown RBP7.86□□□□□ -1.15
SOF1YLL011W LEO1P38439 464 aa7.81□□□□□ -1.16
SOF1YLL011W PRI1P10363 409 aa7.79□□□□□ -1.16
SOF1YLL011W PTP3P40048 928 aa7.74□□□□□ -1.17
SOF1YLL011W RPL17AP05740 184 aaKnown RBP7.54□□□□□ -1.2
SOF1YLL011W RPL17BP46990 184 aaKnown RBP7.54□□□□□ -1.2
SOF1YLL011W ISW2Q08773 1120 aa7.53□□□□□ -1.2
SOF1YLL011W LEU3P08638 886 aa7.45□□□□□ -1.22
SOF1YLL011W SSP1P38871 571 aa7.44□□□□□ -1.22
SOF1YLL011W RPG1P38249 964 aaKnown RBP7.43□□□□□ -1.22
SOF1YLL011W TSR3Q12094 313 aaKnown RBP7.38□□□□□ -1.23
SOF1YLL011W RIM101P33400 625 aa7.37□□□□□ -1.23
SOF1YLL011W SAS10Q12136 610 aaPredicted RBP7.36□□□□□ -1.23
SOF1YLL011W REB1P21538 810 aa7.36□□□□□ -1.23
SOF1YLL011W SPT21P35209 758 aa7.3□□□□□ -1.24
SOF1YLL011W DMA2P53924 522 aa7.26□□□□□ -1.25
SOF1YLL011W SIS1P25294 352 aaKnown RBP7.25□□□□□ -1.25
SOF1YLL011W YAH1Q12184 172 aaKnown RBP7.25□□□□□ -1.25
SOF1YLL011W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.23□□□□□ -1.25not detected
SOF1YLL011W OXP1P28273 1286 aa7.21□□□□□ -1.26
SOF1YLL011W RPN1P38764 993 aaKnown RBP7.17□□□□□ -1.26
SOF1YLL011W YLR271WQ06152 274 aa7.16□□□□□ -1.26
SOF1YLL011W ABP1P15891 592 aaKnown RBP7.12□□□□□ -1.27
SOF1YLL011W YGL015CP33199 130 aa7.12□□□□□ -1.27
SOF1YLL011W YIL055CP40523 627 aaKnown RBP7.08□□□□□ -1.28
SOF1YLL011W MGA2P40578 1113 aa7.08□□□□□ -1.28
SOF1YLL011W RLF2Q12495 606 aa7.08□□□□□ -1.28
SOF1YLL011W MRPL32P25348 183 aa7.07□□□□□ -1.28
SOF1YLL011W CST9Q06032 482 aa7□□□□□ -1.29
SOF1YLL011W SPB4P25808 606 aaPredicted RBP6.99□□□□□ -1.29
SOF1YLL011W CKB1P43639 278 aa6.98□□□□□ -1.29
SOF1YLL011W RSM7P47150 247 aa6.97□□□□□ -1.29
SOF1YLL011W VPS70P47161 811 aa6.9□□□□□ -1.31
SOF1YLL011W YKR023WP36119 530 aaKnown RBP6.88□□□□□ -1.31
SOF1YLL011W SET1P38827 1080 aaKnown RBP6.88□□□□□ -1.31
SOF1YLL011W PSD2P53037 1138 aaKnown RBP6.85□□□□□ -1.31
SOF1YLL011W YPR148CQ06523 435 aa6.85□□□□□ -1.31
SOF1YLL011W IFH1P39520 1085 aa6.85□□□□□ -1.31
SOF1YLL011W RAM2P29703 316 aa6.84□□□□□ -1.31
SOF1YLL011W KIN1P13185 1064 aa6.82□□□□□ -1.32
SOF1YLL011W AI2P03876 854 aa6.79□□□□□ -1.32
SOF1YLL011W HOP09932 586 aa6.78□□□□□ -1.32
SOF1YLL011W DSF2P38213 736 aa6.78□□□□□ -1.32
SOF1YLL011W YNR021WP53723 404 aaKnown RBP6.75□□□□□ -1.33
SOF1YLL011W PBS2P08018 668 aa6.74□□□□□ -1.33
SOF1YLL011W HGH1P48362 394 aaKnown RBP6.74□□□□□ -1.33
SOF1YLL011W TFC8Q12308 588 aa6.73□□□□□ -1.33
SOF1YLL011W DCD1P06773 312 aa6.73□□□□□ -1.33
SOF1YLL011W GLC3P32775 704 aa6.73□□□□□ -1.33
SOF1YLL011W AIM44Q99299 758 aa6.72□□□□□ -1.33
SOF1YLL011W YML020WQ03722 664 aa6.71□□□□□ -1.34
SOF1YLL011W RCR1P38212 213 aa6.69□□□□□ -1.34
SOF1YLL011W BBC1P47068 1157 aa6.67□□□□□ -1.34
SOF1YLL011W GUA1P38625 525 aaKnown RBP6.66□□□□□ -1.34
SOF1YLL011W AIM7Q12156 149 aa6.66□□□□□ -1.34
SOF1YLL011W MRM1P25270 412 aa6.65□□□□□ -1.35
SOF1YLL011W MAM3Q12296 706 aa6.65□□□□□ -1.35
SOF1YLL011W IES2P40154 320 aa6.64□□□□□ -1.35
SOF1YLL011W MAK11P20484 414 aaKnown RBP6.62□□□□□ -1.35
SOF1YLL011W DIT2P21595 489 aa6.62□□□□□ -1.35
SOF1YLL011W NOP8Q08287 484 aaPredicted RBP6.61□□□□□ -1.35
SOF1YLL011W SLX8P40072 274 aa6.6□□□□□ -1.35
SOF1YLL011W ORC1P54784 914 aaPredicted RBP6.6□□□□□ -1.35
SOF1YLL011W NUP42P49686 430 aaKnown RBP6.6□□□□□ -1.35
SOF1YLL011W BCH2P36122 765 aa6.59□□□□□ -1.36
SOF1YLL011W SSA1P10591 642 aaKnown RBP6.58□□□□□ -1.36
SOF1YLL011W GEF1P37020 779 aa6.58□□□□□ -1.36
SOF1YLL011W RTG3P38165 486 aa6.58□□□□□ -1.36
SOF1YLL011W NAP1P25293 417 aaKnown RBP6.57□□□□□ -1.36
SOF1YLL011W HPC2Q01448 625 aa6.56□□□□□ -1.36
SOF1YLL011W TFB3Q03290 321 aa6.56□□□□□ -1.36
SOF1YLL011W REF2P42073 533 aaPredicted RBP6.55□□□□□ -1.36
SOF1YLL011W MAK21Q12176 1025 aaKnown RBP6.55□□□□□ -1.36
SOF1YLL011W COQ8P27697 501 aa6.54□□□□□ -1.36
SOF1YLL011W CDC27P38042 758 aa6.54□□□□□ -1.36
SOF1YLL011W UBP9P39967 754 aa6.54□□□□□ -1.36
SOF1YLL011W ATF2P53296 535 aa6.54□□□□□ -1.36
SOF1YLL011W IOC4Q04213 475 aa6.54□□□□□ -1.36
SOF1YLL011W SUB2Q07478 446 aaKnown RBP6.54□□□□□ -1.36
SOF1YLL011W EPS1P40557 701 aa6.53□□□□□ -1.36
SOF1YLL011W RGA2Q06407 1009 aa6.53□□□□□ -1.36
SOF1YLL011W PKC1P24583 1151 aa6.49□□□□□ -1.37
SOF1YLL011W BRL1P38770 471 aa6.49□□□□□ -1.37
SOF1YLL011W BDF1P35817 686 aa6.46□□□□□ -1.38
SOF1YLL011W COX6P00427 148 aa6.45□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 47.7 ms