RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	GEX1	P25596	615 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	YCR061W	P25639	631 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	YPT7	P32939	208 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	GEX2	P36173	615 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	MRPL4	P36517	319 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	SLM4	P38247	162 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	ERC1	P38767	581 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	YHR045W	P38775	560 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	AFG3	P39925	761 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	CAB2	P40506	365 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	LOH1	P47055	219 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	HAM1	P47119	197 aa	Known RBP	4.1	□□□□□ -1.75
UBP6	YFR010W	GTO1	P48239	356 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	PRP31	P49704	494 aa	Predicted RBP	4.1	□□□□□ -1.75
UBP6	YFR010W	MND1	P53102	219 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	PUS2	P53167	370 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	YGR012W	P53206	393 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	YNL146W	P53906	100 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	BET4	Q00618	327 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	ACS1	Q01574	713 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	VPS38	Q05919	439 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	YLR224W	Q05947	369 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	CDA1	Q06702	301 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	NOP12	Q08208	459 aa	Known RBP	4.1	□□□□□ -1.75
UBP6	YFR010W	SPE4	Q12455	300 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	CFT1	Q06632	1357 aa	Known RBP	4.09	□□□□□ -1.75
UBP6	YFR010W	ERG8	P24521	451 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	RVS161	P25343	265 aa	Known RBP	4.09	□□□□□ -1.75
UBP6	YFR010W	YCL068C	P25593	260 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	ZIP1	P31111	875 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	NDI1	P32340	513 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	YPT52	P36018	234 aa	Known RBP	4.09	□□□□□ -1.75
UBP6	YFR010W	ALY1	P36117	915 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	ECM21	P38167	1117 aa	Known RBP	4.09	□□□□□ -1.75
UBP6	YFR010W	POA1	P38218	177 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	SFB3	P38810	929 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	MLH1	P38920	769 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	JHD1	P40034	492 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	ECM27	P47144	725 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	BIO3	P50277	480 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	PRM1	P53835	661 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	SAM50	P53969	484 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	HDA1	P53973	706 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	SPO19	Q03029	223 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	PDR8	Q06149	701 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	VAM6	Q07468	1049 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	CMS1	Q07897	291 aa	Known RBP	4.09	□□□□□ -1.75
UBP6	YFR010W	LYS21	Q12122	440 aa	Known RBP	4.09	□□□□□ -1.75
UBP6	YFR010W	GET4	Q12125	312 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	YOS9	Q99220	542 aa		4.09	□□□□□ -1.75
UBP6	YFR010W	URA3	P03962	267 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	NTH1	P32356	751 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	KES1	P35844	434 aa	Known RBP	4.08	□□□□□ -1.76
UBP6	YFR010W	AKL1	P38080	1108 aa	Known RBP	4.08	□□□□□ -1.76
UBP6	YFR010W	KAP104	P38217	918 aa	Known RBP	4.08	□□□□□ -1.76
UBP6	YFR010W	RTC3	P38804	111 aa	Predicted RBP	4.08	□□□□□ -1.76
UBP6	YFR010W	CCT6	P39079	546 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	ALG5	P40350	334 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
UBP6	YFR010W	YIR042C	P40586	236 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	CEP3	P40969	608 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	BNA6	P43619	295 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	RPA34	P47006	233 aa	Predicted RBP	4.08	□□□□□ -1.76
UBP6	YFR010W	YGL185C	P53100	379 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	RTT102	P53330	157 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	INN1	P53901	409 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	URH1	Q04179	340 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	ERV41	Q04651	352 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	SPC2	Q04969	178 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	GMC2	Q06201	188 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	GRS2	Q06817	618 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	YFH1	Q07540	174 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	SMC5	Q08204	1093 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	BUD7	Q08754	746 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	UPC2	Q12151	913 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	ATG11	Q12527	1178 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	YPT6	Q99260	215 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	VCX1	Q99385	411 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	YLR278C	Q05854	1341 aa		4.08	□□□□□ -1.76
UBP6	YFR010W	ILV5	P06168	395 aa	Known RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	HIP1	P06775	603 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	SPE1	P08432	466 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	CDC23	P16522	626 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	UGA1	P17649	471 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	ADY2	P25613	283 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	ICL1	P28240	557 aa	Predicted RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	BMH1	P29311	267 aa	Known RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	MVD1	P32377	396 aa	Known RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	TYE7	P33122	291 aa	Predicted RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	PMT1	P33775	817 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	PTK1	P36002	662 aa	Predicted RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	MRPL10	P36520	322 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	MAL33	P38157	468 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	CDS1	P38221	457 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	TDP1	P38319	544 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	EGD2	P38879	174 aa	Known RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	SEC31	P38968	1273 aa	Known RBP	4.07	□□□□□ -1.76
UBP6	YFR010W	SUR2	P38992	349 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	SER3	P40054	469 aa		4.07	□□□□□ -1.76
UBP6	YFR010W	FMC1	P40491	155 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms