RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	HBT1	Q07653	1046 aa	Known RBP	4	□□□□□ -1.77
UBX5	YDR330W	SLK19	Q08581	821 aa	Known RBP	4	□□□□□ -1.77
UBX5	YDR330W	APL4	Q12028	832 aa		4	□□□□□ -1.77
UBX5	YDR330W	ACF2	Q12168	779 aa		4	□□□□□ -1.77
UBX5	YDR330W	TUS1	Q06412	1307 aa		4	□□□□□ -1.77
UBX5	YDR330W	COX1	P00401	534 aa		4	□□□□□ -1.77
UBX5	YDR330W	CDC37	P06101	506 aa	Known RBP	4	□□□□□ -1.77
UBX5	YDR330W	CBS1	P14066	229 aa		4	□□□□□ -1.77
UBX5	YDR330W	AMD2	P22580	549 aa		4	□□□□□ -1.77
UBX5	YDR330W	MRPL9	P31334	269 aa		4	□□□□□ -1.77
UBX5	YDR330W	YET1	P35723	206 aa		4	□□□□□ -1.77
UBX5	YDR330W	HES1	P35843	434 aa		4	□□□□□ -1.77
UBX5	YDR330W	PCH2	P38126	564 aa		4	□□□□□ -1.77
UBX5	YDR330W	CTM1	P38818	585 aa		4	□□□□□ -1.77
UBX5	YDR330W	SHC1	P39000	512 aa		4	□□□□□ -1.77
UBX5	YDR330W	UBP5	P39944	805 aa		4	□□□□□ -1.77
UBX5	YDR330W	JHD1	P40034	492 aa		4	□□□□□ -1.77
UBX5	YDR330W	MSE1	P48525	536 aa		4	□□□□□ -1.77
UBX5	YDR330W	YNL092W	P53934	400 aa		4	□□□□□ -1.77
UBX5	YDR330W	YML119W	Q03208	357 aa		4	□□□□□ -1.77
UBX5	YDR330W	NGL3	Q03210	505 aa		4	□□□□□ -1.77
UBX5	YDR330W	EBS1	Q03466	884 aa	Known RBP	4	□□□□□ -1.77
UBX5	YDR330W	YPL191C	Q08930	360 aa		4	□□□□□ -1.77
UBX5	YDR330W	AI5_ALPHA	Q9ZZX1	630 aa		4	□□□□□ -1.77
UBX5	YDR330W	SPO11	P23179	398 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	SAS3	P34218	831 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	AGP2	P38090	596 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	ERG7	P38604	731 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	ERC1	P38767	581 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	RTT107	P38850	1070 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	SPT8	P38915	602 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	VPS45	P38932	577 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	GPD2	P41911	440 aa	Known RBP	3.99	□□□□□ -1.77
UBX5	YDR330W	AIP1	P46680	615 aa	Known RBP	3.99	□□□□□ -1.77
UBX5	YDR330W	FYV8	P46949	817 aa	Known RBP	3.99	□□□□□ -1.77
UBX5	YDR330W	GLO1	P50107	326 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	BNI5	P53890	448 aa	Known RBP	3.99	□□□□□ -1.77
UBX5	YDR330W	ALF1	P53904	254 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	YDR109C	Q04585	715 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	CSM3	Q04659	317 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	CRN1	Q06440	651 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	SWA2	Q06677	668 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	CIR2	Q08822	631 aa		3.99	□□□□□ -1.77
UBX5	YDR330W	MET17	P06106	444 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	SAM2	P19358	384 aa	Known RBP	3.98	□□□□□ -1.77
UBX5	YDR330W	ISY1	P21374	235 aa	Predicted RBP	3.98	□□□□□ -1.77
UBX5	YDR330W	LAC1	P28496	418 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	PSO2	P30620	661 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	GDA1	P32621	518 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	PEX5	P35056	612 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	KES1	P35844	434 aa	Known RBP	3.98	□□□□□ -1.77
UBX5	YDR330W	BYE1	P36106	594 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	AUR1	P36107	401 aa	Predicted RBP	3.98	□□□□□ -1.77
UBX5	YDR330W	YBL028C	P38202	106 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	CST26	P38226	397 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	REG2	P38232	338 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	MUM2	P38236	366 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	TCD1	P38756	429 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	YNR061C	P53747	219 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	YAT1	P80235	687 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	VPS60	Q03390	229 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	YML053C	Q04978	212 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	VPS38	Q05919	439 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	PSR1	Q07800	427 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
UBX5	YDR330W	ATG9	Q12142	997 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	LCB4	Q12246	624 aa		3.98	□□□□□ -1.77
UBX5	YDR330W	FKS1	P38631	1876 aa	Known RBP	3.97	□□□□□ -1.77
UBX5	YDR330W	CET1	O13297	549 aa	Predicted RBP	3.97	□□□□□ -1.77
UBX5	YDR330W	PET111	P08468	800 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	KAR3	P17119	729 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	CKA2	P19454	339 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	RRP43	P25359	394 aa	Predicted RBP	3.97	□□□□□ -1.77
UBX5	YDR330W	DMC1	P25453	334 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	POL4	P25615	582 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	ERG3	P32353	365 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	VMA8	P32610	256 aa	Known RBP	3.97	□□□□□ -1.77
UBX5	YDR330W	EFM2	P38347	419 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	VBA2	P38358	474 aa	Known RBP	3.97	□□□□□ -1.77
UBX5	YDR330W	GIP4	P39732	760 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	RGI2	P40188	164 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	SEC24	P40482	926 aa	Known RBP	3.97	□□□□□ -1.77
UBX5	YDR330W	AXL1	P40851	1208 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	OPT1	P40897	799 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	MSY1	P48527	492 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	LSB1	P53281	241 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	CPR8	P53728	308 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	MUK1	Q02866	612 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	YML037C	Q03703	340 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	PLM2	Q04383	521 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	SUE1	Q06524	206 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	GRC3	Q07845	632 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	TLG2	Q08144	397 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	YAP7	Q08182	245 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	YOL075C	Q08234	1294 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	RTN2	Q12443	393 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	SMC6	Q12749	1114 aa		3.97	□□□□□ -1.77
UBX5	YDR330W	TPK2	P06245	380 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	PET123	P17558	318 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	CDC43	P18898	376 aa		3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms