RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	KAP95	Q06142	861 aa	Known RBP	5.54	□□□□□ -1.52
NUP1	YOR098C	PFK27	Q12471	397 aa	Predicted RBP	5.54	□□□□□ -1.52
NUP1	YOR098C	PUT4	P15380	627 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	PRE2	P30656	287 aa	Known RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	YAP3	P38749	330 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	RIX1	P38883	763 aa	Predicted RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	CHS6	P40955	746 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	ALK1	P43633	760 aa	Known RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	SMC3	P47037	1230 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	YOR019W	Q99248	730 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	CHC1	P22137	1653 aa	Known RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	NTG1	P31378	399 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	GEX2	P36173	615 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	SFB3	P38810	929 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	YIL089W	P40500	205 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	PKP1	P40530	394 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	RPC11	Q04307	110 aa	Predicted RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	ECM18	Q04623	453 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	PEX19	Q07418	342 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	SNT1	P25357	1226 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	SYN8	P31377	255 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	PGM1	P33401	570 aa	Known RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	EHT1	P38295	451 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	ZRG8	P40021	1076 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	MAF1	P41910	395 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	ASE1	P50275	885 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	RHO5	P53879	331 aa	Known RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	PPN1	Q04119	674 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	RQC1	Q05468	723 aa	Known RBP	5.53	□□□□□ -1.52
NUP1	YOR098C	DCI1	Q08558	271 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	SWT1	Q12104	458 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	UBX3	Q12229	455 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	SLP1	Q12232	587 aa		5.53	□□□□□ -1.52
NUP1	YOR098C	GAL7	P08431	366 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	PMT1	P33775	817 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	PFA3	P42836	336 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	NPA3	P47122	385 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	HEF3	P53978	1044 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	YMR265C	Q03508	461 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	ATG38	Q05789	226 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	CDA1	Q06702	301 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	PNO1	Q99216	274 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	DMC1	P25453	334 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	PRP45	P28004	379 aa	Predicted RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	ERC1	P38767	581 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	CRG1	P38892	291 aa	RIP-Chip data	5.52	□□□□□ -1.53	not detected
NUP1	YOR098C	BIT61	P47041	543 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	MLC1	P53141	149 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	KAP120	Q02932	1032 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	UAF30	Q08747	228 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	TRE1	Q08919	783 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	ROM2	P51862	1356 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	LPD1	P09624	499 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	ERG6	P25087	383 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	CRM1	P30822	1084 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	COS111	P38308	924 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	DED81	P38707	554 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	OSH7	P38755	437 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	YHR078W	P38799	552 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	LRO1	P40345	661 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	YGL036W	P53185	909 aa	Predicted RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	YPL108W	Q02872	168 aa	Predicted RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	YPL272C	Q08984	517 aa		5.52	□□□□□ -1.53
NUP1	YOR098C	ERG27	Q12452	347 aa	Known RBP	5.52	□□□□□ -1.53
NUP1	YOR098C	DNF3	Q12674	1656 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	SAM35	P14693	329 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	BUD5	P25300	642 aa	Predicted RBP	5.51	□□□□□ -1.53
NUP1	YOR098C	VMR1	P38735	1592 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	WSS1	P38838	269 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	CTF8	P38877	133 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	FTR1	P40088	404 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	DLD2	P46681	530 aa	Known RBP	5.51	□□□□□ -1.53
NUP1	YOR098C	YDR239C	Q03780	787 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	YSH1	Q06224	779 aa	Predicted RBP	5.51	□□□□□ -1.53
NUP1	YOR098C	TUP1	P16649	713 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	BUD14	P27637	709 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	SPC110	P32380	944 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	KES1	P35844	434 aa	Known RBP	5.51	□□□□□ -1.53
NUP1	YOR098C	CCL1	P37366	393 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	DSE4	P53753	1117 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	RBS1	Q05672	457 aa	Known RBP	5.51	□□□□□ -1.53
NUP1	YOR098C	VPS54	Q12071	889 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	RUD3	Q12234	484 aa	Known RBP	5.51	□□□□□ -1.53
NUP1	YOR098C	KRE5	P22023	1365 aa		5.51	□□□□□ -1.53
NUP1	YOR098C	PRD1	P25375	712 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	GCD7	P32502	381 aa	Predicted RBP	5.5	□□□□□ -1.53
NUP1	YOR098C	KSP1	P38691	1029 aa	Known RBP	5.5	□□□□□ -1.53
NUP1	YOR098C	PET130	P47065	347 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	PRP31	P49704	494 aa	Predicted RBP	5.5	□□□□□ -1.53
NUP1	YOR098C	ARG5,6	Q01217	863 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	MUS81	Q04149	632 aa	Predicted RBP	5.5	□□□□□ -1.53
NUP1	YOR098C	MSC3	Q05812	728 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	VPS38	Q05919	439 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	RTT109	Q07794	436 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	PSK1	P31374	1356 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	IML1	P47170	1584 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	GAL80	P04387	435 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	AKR1	P39010	764 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	IME4	P41833	600 aa		5.5	□□□□□ -1.53
NUP1	YOR098C	UBP2	Q01476	1272 aa		5.5	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms