RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	RAI1	P53063	387 aa	Known RBP	4.06	□□□□□ -1.76
PUB1	YNL016W	COG1	P53079	417 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	CUL3	P53202	744 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	REG1	Q00816	1014 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	CWC21	Q03375	135 aa	Known RBP	4.06	□□□□□ -1.76
PUB1	YNL016W	RCR2	Q03446	210 aa	Known RBP	4.06	□□□□□ -1.76
PUB1	YNL016W	CSI1	Q04368	295 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	ADY4	Q05955	493 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	MMR1	Q06324	491 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	FMP45	Q07651	309 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	XYL2	Q07993	356 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	YOR223W	Q12015	292 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	DAP1	Q12091	152 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	OSW2	Q12202	724 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	SLP1	Q12232	587 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	GPM3	Q12326	303 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	GPR1	Q12361	961 aa		4.06	□□□□□ -1.76
PUB1	YNL016W	DBP3	P20447	523 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	PRE8	P23639	250 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	PET127	P32606	800 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	YPT7	P32939	208 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	LOT5	P34234	306 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	UBP11	P36026	717 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	DAD2	P36162	133 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	ADH5	P38113	351 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	TOM71	P38825	639 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	MTG2	P38860	518 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	SPT8	P38915	602 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	MRX1	P40050	688 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	GLO1	P50107	326 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	SHE4	P51534	789 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	MCM6	P53091	1017 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	PUS2	P53167	370 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	SPO1	P53541	631 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	ORC4	P54791	529 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	SDH1	Q00711	640 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	ATG21	Q02887	496 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	NGL2	Q03264	515 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	DOT1	Q04089	582 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	DON1	Q05610	365 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	SKG3	Q06315	1026 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	RCL1	Q08096	367 aa	Predicted RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	RIM20	Q12033	661 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	RTC5	Q12108	567 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	CHS5	Q12114	671 aa	Known RBP	4.05	□□□□□ -1.76
PUB1	YNL016W	MDY2	Q12285	212 aa		4.05	□□□□□ -1.76
PUB1	YNL016W	RPP0	P05317	312 aa	Known RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	YML002W	P0CF17	737 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	HMG2	P12684	1045 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	STE12	P13574	688 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	PHO84	P25297	587 aa	Known RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	RAD51	P25454	400 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	YUR1	P26725	428 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	RPD3	P32561	433 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	VPS17	P32913	551 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	CDS1	P38221	457 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	VID24	P38263	362 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	TDP1	P38319	544 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	YHR033W	P38690	423 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	AGX1	P43567	385 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	TAH11	P47112	604 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	SCS3	P53012	380 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	RPN14	P53196	417 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	DAK1	P54838	584 aa	Known RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	RIP-Chip
PUB1	YNL016W	RRN5	Q02983	363 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	MUB1	Q03162	620 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	VBA4	Q04602	768 aa	Known RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	DBP9	Q06218	594 aa	Known RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	LUC7	Q07508	261 aa	Predicted RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	UPC2	Q12151	913 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	RPN5	Q12250	445 aa	Known RBP	4.04	□□□□□ -1.76
PUB1	YNL016W	HER1	Q12276	1246 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	SUL2	Q12325	893 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	YJR112W-A	Q3E743	109 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	VCX1	Q99385	411 aa		4.04	□□□□□ -1.76
PUB1	YNL016W	RPS19A	P07280	144 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	RPS19B	P07281	144 aa	Predicted RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
PUB1	YNL016W	RNA1	P11745	407 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	POX1	P13711	748 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	FRS1	P15624	595 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	ERG8	P24521	451 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	CAD1	P24813	409 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	SRP101	P32916	621 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	POL12	P38121	705 aa	Predicted RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	YHR097C	P38809	366 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	OSW5	P40219	148 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	PFK26	P40433	827 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	TED1	P40533	473 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	NUP84	P52891	726 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	VID30	P53076	958 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	PDR16	P53860	351 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	INN1	P53901	409 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	TRS31	Q03337	283 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	SLD5	Q03406	294 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	EFR3	Q03653	782 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	TPP1	Q03796	238 aa		4.03	□□□□□ -1.76
PUB1	YNL016W	ARX1	Q03862	593 aa	Known RBP	4.03	□□□□□ -1.76
PUB1	YNL016W	PPN1	Q04119	674 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 26.8 ms