RNA–Protein interactions for RNA: YOR004W

UTP23, Transcript of Component of the small subunit processome, yeast

Gene UTP23, Length 765 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UTP23	YOR004W	YOL075C	Q08234	1294 aa		4.11	□□□□□ -1.75
UTP23	YOR004W	NUC1	P08466	329 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	SPO16	P17122	198 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	THR1	P17423	357 aa	Known RBP	4.1	□□□□□ -1.75
UTP23	YOR004W	ISY1	P21374	235 aa	Predicted RBP	4.1	□□□□□ -1.75
UTP23	YOR004W	MRPL25	P23369	157 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	RIT1	P23796	513 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	RPT3	P33298	428 aa	Known RBP	4.1	□□□□□ -1.75
UTP23	YOR004W	XRS2	P33301	854 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	TFC4	P33339	1025 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	YEL1	P34225	687 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	ECM4	P36156	370 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	EXO84	P38261	753 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	TIF5	P38431	405 aa	Known RBP	4.1	□□□□□ -1.75
UTP23	YOR004W	PES4	P39684	611 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	JEM1	P40358	645 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	CSM2	P40465	213 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	NMD5	P46970	1048 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	ASE1	P50275	885 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	TAF6	P53040	516 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	SHE10	P53075	577 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	LEE1	Q02799	301 aa	Known RBP	4.1	□□□□□ -1.75
UTP23	YOR004W	TDA9	Q04545	1251 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	CSM3	Q04659	317 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	INM2	Q05533	292 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	ATG17	Q06410	417 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	OSW1	Q08692	278 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	USV1	Q12132	391 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	PSF3	Q12146	194 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	IES3	Q12345	250 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	NKP1	Q12493	238 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	RAD61	Q99359	647 aa		4.1	□□□□□ -1.75
UTP23	YOR004W	YLR462W	O13556	202 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	TUF1	P02992	437 aa	Known RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	ADE3	P07245	946 aa	Known RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	PCL2	P25693	308 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	RAD16	P31244	790 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	SET3	P36124	751 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	APN2	P38207	520 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	YHL049C	P38722	271 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	YEL075C	P39972	122 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	SCS2	P40075	244 aa	Known RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	LCP5	P40079	357 aa	Predicted RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	YER189W	P40104	122 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	YFL064C	P43540	174 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	TOS3	P43637	560 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	DSL1	P53847	754 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	BNI5	P53890	448 aa	Known RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	CBK1	P53894	756 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	ESBP6	P53918	673 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	DIG1	Q03063	452 aa	Known RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	ATG33	Q06485	197 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	DIB1	Q06819	143 aa	Predicted RBP	4.09	□□□□□ -1.75
UTP23	YOR004W	TCO89	Q08921	799 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	VIK1	Q12045	647 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	BUG1	Q12191	341 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	MED1	Q12321	566 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	YBL111C	Q3E7Y5	667 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	ECM3	Q99252	613 aa		4.09	□□□□□ -1.75
UTP23	YOR004W	FIG2	P25653	1609 aa		4.09	□□□□□ -1.76
UTP23	YOR004W	SNF1	P06782	633 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	ILV2	P07342	687 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	ABF1	P14164	731 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	SPS22	P25380	463 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	FUB1	P25659	250 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	KAR9	P32526	644 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	BCS1	P32839	456 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	HIS2	P38635	335 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	ARB1	P40024	610 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	YNL195C	P40168	261 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	AIM20	P40451	204 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	RSC8	P43609	557 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	VID30	P53076	958 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	AIM14	P53109	570 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	COS6	P53344	381 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	BRE5	P53741	515 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	YNL040W	P53960	456 aa	Predicted RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	UTP14	Q04500	899 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	YSH1	Q06224	779 aa	Predicted RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	THI3	Q07471	609 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	RIX7	Q07844	837 aa	Known RBP	4.08	□□□□□ -1.76
UTP23	YOR004W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
UTP23	YOR004W	VHS3	Q08438	674 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	DSE3	Q08729	430 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	YPL216W	Q08964	1102 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	MSH5	Q12175	901 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	RUP1	Q12242	671 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	YPT6	Q99260	215 aa		4.08	□□□□□ -1.76
UTP23	YOR004W	MYO1	P08964	1928 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	HMG1	P12683	1054 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	CLN3	P13365	580 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	URA4	P20051	364 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	PRP28	P23394	588 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	MGM1	P32266	881 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	EFB1	P32471	206 aa	Known RBP	4.07	□□□□□ -1.76
UTP23	YOR004W	YKR015C	P36111	568 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	GMH1	P36125	273 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	SRL3	P36167	246 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	YBR032W	P38223	100 aa		4.07	□□□□□ -1.76
UTP23	YOR004W	BIT2	P38346	545 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms