RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	VPS8	P39702	1274 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	SAP1	P39955	897 aa	Known RBP	1.76	□□□□□ -2.13
VPS55	YJR044C	GPP1	P41277	250 aa	Known RBP	1.76	□□□□□ -2.13
VPS55	YJR044C	CIR1	P42940	261 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	IML2	P47031	731 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	SPC105	P53148	917 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	YGR021W	P53212	290 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	COG2	P53271	262 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	PAP2	P53632	584 aa	Known RBP	1.76	□□□□□ -2.13
VPS55	YJR044C	SQS1	P53866	767 aa	Known RBP	1.76	□□□□□ -2.13
VPS55	YJR044C	YNL144C	P53907	740 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	COG6	P53959	839 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	UBX4	P54730	416 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	ACS1	Q01574	713 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	MTD1	Q02046	320 aa	Known RBP	1.76	□□□□□ -2.13
VPS55	YJR044C	UBP16	Q02863	499 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	YMR018W	Q04364	514 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	SMA2	Q04658	369 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	PHM6	Q05637	104 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	COG4	Q06096	861 aa		1.76	□□□□□ -2.13
VPS55	YJR044C	PGI1	P12709	554 aa	Known RBP	1.75	□□□□□ -2.13
VPS55	YJR044C	ARG1	P22768	420 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	PTP2	P29461	750 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	SSH4	P32343	579 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	MFT1	P33441	392 aa	Known RBP	1.75	□□□□□ -2.13
VPS55	YJR044C	DID4	P36108	232 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	JNM1	P36224	373 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	EXO84	P38261	753 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	STB5	P38699	743 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	EMP65	P40085	556 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	VPS27	P40343	622 aa	Known RBP	1.75	□□□□□ -2.13
VPS55	YJR044C	RAD26	P40352	1085 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	IRC5	P43610	853 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	SLD3	P53135	668 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	MET14	Q02196	202 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	YML053C	Q04978	212 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	LCB4	Q12246	624 aa		1.75	□□□□□ -2.13
VPS55	YJR044C	TUF1	P02992	437 aa	Known RBP	1.74	□□□□□ -2.13
VPS55	YJR044C	CHO2	P05374	869 aa	Known RBP	1.74	□□□□□ -2.13
VPS55	YJR044C	PLC1	P32383	869 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	ENP1	P38333	483 aa	Known RBP	1.74	□□□□□ -2.13
VPS55	YJR044C	VID27	P40157	782 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	UBP7	P40453	1071 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	FAF1	P40546	346 aa	Predicted RBP	1.74	□□□□□ -2.13
VPS55	YJR044C	DUG1	P43616	481 aa	Known RBP	1.74	□□□□□ -2.13
VPS55	YJR044C	RNR4	P49723	345 aa	Known RBP	1.74	□□□□□ -2.13
VPS55	YJR044C	YNL034W	P53963	612 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	FMP42	Q04991	504 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	YLR352W	Q06479	807 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	MLC2	Q06580	163 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	YPR027C	Q12079	277 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	YER175W-A	Q8TGU4	54 aa		1.74	□□□□□ -2.13
VPS55	YJR044C	URA3	P03962	267 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	GAL1	P04385	528 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	CWH43	P25618	953 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	MPE1	P35728	441 aa	Known RBP	1.73	□□□□□ -2.13
VPS55	YJR044C	KES1	P35844	434 aa	Known RBP	1.73	□□□□□ -2.13
VPS55	YJR044C	SLX1	P38324	304 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	ARO9	P38840	513 aa	Predicted RBP	1.73	□□□□□ -2.13
VPS55	YJR044C	SAW1	P39735	261 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	EAF5	P39995	279 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	TMA108	P40462	946 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	HIS6	P40545	261 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	SAP185	P40856	1058 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	YJL107C	P42947	387 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	COS12	P53053	380 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	MNT2	P53059	558 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	ESF2	P53743	316 aa	Known RBP	1.73	□□□□□ -2.13
VPS55	YJR044C	YNL058C	P53947	316 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	PLM2	Q04383	521 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	PSR2	Q07949	397 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	RSA1	Q08932	381 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	RTK1	Q12100	620 aa	Predicted RBP	1.73	□□□□□ -2.13
VPS55	YJR044C	RRP6	Q12149	733 aa	Known RBP	1.73	□□□□□ -2.13
VPS55	YJR044C	VPS5	Q92331	675 aa		1.73	□□□□□ -2.13
VPS55	YJR044C	SSM4	P40318	1319 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	SEC12	P11655	471 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	COX11	P19516	300 aa	Known RBP	1.72	□□□□□ -2.13
VPS55	YJR044C	CBP3	P21560	335 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	MSH1	P25846	959 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	CHS3	P29465	1165 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	AZF1	P41696	914 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	QRI7	P43122	407 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	MDR1	P53258	950 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	HOL1	P53389	586 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	IMP4	P53941	290 aa	Known RBP	1.72	□□□□□ -2.13
VPS55	YJR044C	SKY1	Q03656	742 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	HIM1	Q06674	414 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	PEX15	Q08215	383 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	ENT1	Q12518	454 aa		1.72	□□□□□ -2.13
VPS55	YJR044C	SES1	P07284	462 aa	Known RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	PRP16	P15938	1071 aa	Predicted RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	DBF20	P32328	564 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	TFC3	P34111	1160 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	SDS22	P36047	338 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	MRPL36	P36531	177 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	MNN2	P38069	597 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	SRP68	P38687	599 aa	Known RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	GPP2	P40106	250 aa	Known RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	RPT2	P40327	437 aa	Known RBP	1.71	□□□□□ -2.14

Retrieved 100 of 5,963 RNA–protein pairs in 43.1 ms