RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C CRF1Q04930 467 aa2.45□□□□□ -2.02
PCF11YDR228C MLH2Q07980 695 aa2.45□□□□□ -2.02
PCF11YDR228C YOR389WQ08912 624 aa2.45□□□□□ -2.02
PCF11YDR228C PUF2Q12221 1075 aaKnown RBP RIP-Chip data2.45□□□□□ -2.02not detected
PCF11YDR228C RRI1Q12468 440 aa2.45□□□□□ -2.02
PCF11YDR228C ADH4P10127 382 aa2.44□□□□□ -2.02
PCF11YDR228C PHO3P24031 467 aa2.44□□□□□ -2.02
PCF11YDR228C PTC6P25646 442 aa2.44□□□□□ -2.02
PCF11YDR228C TAF5P38129 798 aa2.44□□□□□ -2.02
PCF11YDR228C ARC40P38328 384 aaKnown RBP2.44□□□□□ -2.02
PCF11YDR228C LNP1P38878 278 aa2.44□□□□□ -2.02
PCF11YDR228C VPS41P38959 992 aa2.44□□□□□ -2.02
PCF11YDR228C YIR016WP40572 265 aa2.44□□□□□ -2.02
PCF11YDR228C IMA5P40884 581 aa2.44□□□□□ -2.02
PCF11YDR228C PHM6Q05637 104 aa2.44□□□□□ -2.02
PCF11YDR228C AAD4Q07747 329 aa2.44□□□□□ -2.02
PCF11YDR228C YOR111WQ99210 232 aa2.44□□□□□ -2.02
PCF11YDR228C KAR1P11927 433 aa2.43□□□□□ -2.02
PCF11YDR228C RPF2P36160 344 aaKnown RBP2.43□□□□□ -2.02
PCF11YDR228C YAT2P40017 923 aa2.43□□□□□ -2.02
PCF11YDR228C DSE3Q08729 430 aa2.43□□□□□ -2.02
PCF11YDR228C LEA1Q08963 238 aaPredicted RBP2.43□□□□□ -2.02
PCF11YDR228C FRD1P32614 470 aaKnown RBP2.43□□□□□ -2.02
PCF11YDR228C SDS22P36047 338 aa2.43□□□□□ -2.02
PCF11YDR228C SWD1P39706 426 aa2.43□□□□□ -2.02
PCF11YDR228C YPT11P48559 417 aa2.43□□□□□ -2.02
PCF11YDR228C YPR003CP53394 754 aa2.43□□□□□ -2.02
PCF11YDR228C VPS64Q03944 604 aa2.43□□□□□ -2.02
PCF11YDR228C CTT1P06115 562 aa2.42□□□□□ -2.02
PCF11YDR228C RPS7AP26786 190 aaKnown RBP2.42□□□□□ -2.02
PCF11YDR228C TFC4P33339 1025 aa2.42□□□□□ -2.02
PCF11YDR228C HES1P35843 434 aa2.42□□□□□ -2.02
PCF11YDR228C NPA3P47122 385 aa2.42□□□□□ -2.02
PCF11YDR228C YRB30P53107 440 aaPredicted RBP2.42□□□□□ -2.02
PCF11YDR228C ESF2P53743 316 aaKnown RBP2.42□□□□□ -2.02
PCF11YDR228C AAT1Q01802 451 aa2.42□□□□□ -2.02
PCF11YDR228C PIG1Q06216 648 aa2.42□□□□□ -2.02
PCF11YDR228C GSH2Q08220 491 aa2.42□□□□□ -2.02
PCF11YDR228C NUR1Q12066 484 aa2.42□□□□□ -2.02
PCF11YDR228C PDE1P22434 369 aa2.41□□□□□ -2.02
PCF11YDR228C OCT1P35999 772 aa2.41□□□□□ -2.02
PCF11YDR228C PEX14P53112 341 aa2.41□□□□□ -2.02
PCF11YDR228C CAC2Q04199 468 aa2.41□□□□□ -2.02
PCF11YDR228C YMR034CQ05131 434 aaPredicted RBP2.41□□□□□ -2.02
PCF11YDR228C ECM22Q05958 814 aaPredicted RBP2.41□□□□□ -2.02
PCF11YDR228C THI3Q07471 609 aa2.41□□□□□ -2.02
PCF11YDR228C ILV2P07342 687 aaKnown RBP2.41□□□□□ -2.02
PCF11YDR228C PHM8P40025 321 aa2.41□□□□□ -2.02
PCF11YDR228C PCL6P40038 420 aa2.41□□□□□ -2.02
PCF11YDR228C YNL034WP53963 612 aa2.41□□□□□ -2.02
PCF11YDR228C CEG1Q01159 459 aaPredicted RBP2.41□□□□□ -2.02
PCF11YDR228C YTH1Q06102 208 aaPredicted RBP2.41□□□□□ -2.02
PCF11YDR228C GRS2Q06817 618 aa2.41□□□□□ -2.02
PCF11YDR228C MRC1P25588 1096 aa2.4□□□□□ -2.03
PCF11YDR228C LAC1P28496 418 aa2.4□□□□□ -2.03
PCF11YDR228C SWC3P31376 625 aa2.4□□□□□ -2.03
PCF11YDR228C RTT107P38850 1070 aa2.4□□□□□ -2.03
PCF11YDR228C MET30P39014 640 aa2.4□□□□□ -2.03
PCF11YDR228C SAW1P39735 261 aa2.4□□□□□ -2.03
PCF11YDR228C BUD16P39988 312 aa2.4□□□□□ -2.03
PCF11YDR228C PDR8Q06149 701 aa2.4□□□□□ -2.03
PCF11YDR228C ARP7Q12406 477 aa2.4□□□□□ -2.03
PCF11YDR228C COX1P00401 534 aa2.39□□□□□ -2.03
PCF11YDR228C MCM3P24279 971 aaKnown RBP2.39□□□□□ -2.03
PCF11YDR228C SIP1P32578 815 aa2.39□□□□□ -2.03
PCF11YDR228C NIC96P34077 839 aa2.39□□□□□ -2.03
PCF11YDR228C SCO2P38072 301 aa2.39□□□□□ -2.03
PCF11YDR228C ASK10P48361 1146 aa2.39□□□□□ -2.03
PCF11YDR228C ECM16Q04217 1267 aaKnown RBP2.39□□□□□ -2.03
PCF11YDR228C GTB1Q04924 702 aa2.39□□□□□ -2.03
PCF11YDR228C NRT1Q08485 598 aa2.39□□□□□ -2.03
PCF11YDR228C ICL2Q12031 575 aa2.39□□□□□ -2.03
PCF11YDR228C PHO2P07269 559 aa2.39□□□□□ -2.03
PCF11YDR228C RPL42AP0CX27 106 aaKnown RBP2.39□□□□□ -2.03
PCF11YDR228C RPL42BP0CX28 106 aaKnown RBP2.39□□□□□ -2.03
PCF11YDR228C MSS51P32335 436 aa2.39□□□□□ -2.03
PCF11YDR228C YND1P40009 630 aa2.39□□□□□ -2.03
PCF11YDR228C YIL169CP40442 995 aa2.39□□□□□ -2.03
PCF11YDR228C MSY1P48527 492 aa2.39□□□□□ -2.03
PCF11YDR228C YNL144CP53907 740 aa2.39□□□□□ -2.03
PCF11YDR228C EIS1Q05050 843 aaKnown RBP2.39□□□□□ -2.03
PCF11YDR228C BIK1P11709 440 aa2.38□□□□□ -2.03
PCF11YDR228C STT3P39007 718 aaKnown RBP2.38□□□□□ -2.03
PCF11YDR228C QRI7P43122 407 aa2.38□□□□□ -2.03
PCF11YDR228C TGL2P54857 326 aa2.38□□□□□ -2.03
PCF11YDR228C BET4Q00618 327 aa2.38□□□□□ -2.03
PCF11YDR228C YLR281CQ05863 155 aa2.38□□□□□ -2.03
PCF11YDR228C MCH4Q08268 501 aa2.38□□□□□ -2.03
PCF11YDR228C PCT1P13259 424 aa2.37□□□□□ -2.03
PCF11YDR228C CDC23P16522 626 aa2.37□□□□□ -2.03
PCF11YDR228C URK1P27515 501 aa2.37□□□□□ -2.03
PCF11YDR228C LEU5P38702 357 aa2.37□□□□□ -2.03
PCF11YDR228C HOS2P53096 452 aaPredicted RBP2.37□□□□□ -2.03
PCF11YDR228C YGR079WP53249 370 aa2.37□□□□□ -2.03
PCF11YDR228C GIS2P53849 153 aaKnown RBP RIP-Chip data2.37□□□□□ -2.03not detected
PCF11YDR228C SWF1Q04629 336 aa2.37□□□□□ -2.03
PCF11YDR228C ARP9Q05123 467 aa2.37□□□□□ -2.03
PCF11YDR228C SIR1P21691 654 aa2.37□□□□□ -2.03
PCF11YDR228C MNN2P38069 597 aa2.37□□□□□ -2.03
PCF11YDR228C RKM3P38222 552 aa2.37□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 20 ms