RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 GLO2Q05584 274 aa8.8□□□□□ -1
LSR1LSR1 AAD15Q08361 143 aa8.8□□□□□ -1
LSR1LSR1 IES3Q12345 250 aa8.8□□□□□ -1
LSR1LSR1 HRT3Q12347 344 aa8.8□□□□□ -1
LSR1LSR1 CAR1P00812 333 aaKnown RBP8.79□□□□□ -1
LSR1LSR1 RHO2P06781 192 aa8.79□□□□□ -1
LSR1LSR1 TUB1P09733 447 aaKnown RBP8.79□□□□□ -1
LSR1LSR1 AFT1P22149 690 aa8.79□□□□□ -1
LSR1LSR1 VPS34P22543 875 aa8.79□□□□□ -1
LSR1LSR1 GAC1P28006 793 aa8.79□□□□□ -1
LSR1LSR1 LHS1P36016 881 aa8.79□□□□□ -1
LSR1LSR1 PDX3P38075 228 aaKnown RBP8.79□□□□□ -1
LSR1LSR1 UBX7P38349 436 aa8.79□□□□□ -1
LSR1LSR1 RIM4P38741 713 aa8.79□□□□□ -1
LSR1LSR1 BZZ1P38822 633 aa8.79□□□□□ -1
LSR1LSR1 FIR1P40020 876 aa8.79□□□□□ -1
LSR1LSR1 VNX1P42839 908 aa8.79□□□□□ -1
LSR1LSR1 MNN11P46985 422 aaKnown RBP8.79□□□□□ -1
LSR1LSR1 YJL132WP47014 750 aa8.79□□□□□ -1
LSR1LSR1 AZR1P50080 613 aa8.79□□□□□ -1
LSR1LSR1 TEL2P53038 688 aa8.79□□□□□ -1
LSR1LSR1 MUK1Q02866 612 aa8.79□□□□□ -1
LSR1LSR1 MCH5Q08777 521 aa8.79□□□□□ -1
LSR1LSR1 VIK1Q12045 647 aa8.79□□□□□ -1
LSR1LSR1 GET4Q12125 312 aa8.79□□□□□ -1
LSR1LSR1 EFG1Q3E705 233 aaKnown RBP8.79□□□□□ -1
LSR1LSR1 HVG1P0CE11 249 aa8.78□□□□□ -1
LSR1LSR1 STE6P12866 1290 aa8.78□□□□□ -1
LSR1LSR1 HSC82P15108 705 aaKnown RBP8.78□□□□□ -1
LSR1LSR1 DBP1P24784 617 aaKnown RBP8.78□□□□□ -1
LSR1LSR1 BCK2P33306 851 aa8.78□□□□□ -1
LSR1LSR1 YBR053CP38235 358 aa8.78□□□□□ -1
LSR1LSR1 STS1P38637 319 aa8.78□□□□□ -1
LSR1LSR1 HPM1P40481 377 aa8.78□□□□□ -1
LSR1LSR1 NOP9P47077 666 aaKnown RBP8.78□□□□□ -1
LSR1LSR1 DAN4P47179 1161 aa8.78□□□□□ -1
LSR1LSR1 YMR155WQ03795 547 aa8.78□□□□□ -1
LSR1LSR1 TIF35Q04067 274 aaKnown RBP8.78□□□□□ -1
LSR1LSR1 RRP15Q06511 250 aaPredicted RBP8.78□□□□□ -1
LSR1LSR1 CHS5Q12114 671 aaKnown RBP8.78□□□□□ -1
LSR1LSR1 WSC3Q12215 556 aa8.78□□□□□ -1
LSR1LSR1 SEC63P14906 663 aa8.77□□□□□ -1.01
LSR1LSR1 CCR4P31384 837 aaKnown RBP8.77□□□□□ -1.01
LSR1LSR1 PUP2P32379 260 aa8.77□□□□□ -1.01
LSR1LSR1 SPT16P32558 1035 aaKnown RBP8.77□□□□□ -1.01
LSR1LSR1 PEX5P35056 612 aa8.77□□□□□ -1.01
LSR1LSR1 MRP8P35719 219 aa8.77□□□□□ -1.01
LSR1LSR1 ECM4P36156 370 aa8.77□□□□□ -1.01
LSR1LSR1 VRP1P37370 817 aa8.77□□□□□ -1.01
LSR1LSR1 FSH1P38777 243 aaKnown RBP8.77□□□□□ -1.01
LSR1LSR1 SHU2P38957 223 aa8.77□□□□□ -1.01
LSR1LSR1 PRM9P39551 298 aa8.77□□□□□ -1.01
LSR1LSR1 PDS1P40316 373 aaPredicted RBP8.77□□□□□ -1.01
LSR1LSR1 DSL1P53847 754 aa8.77□□□□□ -1.01
LSR1LSR1 AIM32Q04689 311 aa8.77□□□□□ -1.01
LSR1LSR1 BUD20Q08004 166 aaPredicted RBP8.77□□□□□ -1.01
LSR1LSR1 PEX15Q08215 383 aa8.77□□□□□ -1.01
LSR1LSR1 DNL4Q08387 944 aaPredicted RBP8.77□□□□□ -1.01
LSR1LSR1 MET7Q08645 548 aa8.77□□□□□ -1.01
LSR1LSR1 SPE3Q12074 293 aaKnown RBP8.77□□□□□ -1.01
LSR1LSR1 YVC1Q12324 675 aa8.77□□□□□ -1.01
LSR1LSR1 ENO1P00924 437 aaKnown RBP8.76□□□□□ -1.01
LSR1LSR1 AEP1P32493 518 aa8.76□□□□□ -1.01
LSR1LSR1 YKR015CP36111 568 aa8.76□□□□□ -1.01
LSR1LSR1 SLM4P38247 162 aa8.76□□□□□ -1.01
LSR1LSR1 PIK1P39104 1066 aa8.76□□□□□ -1.01
LSR1LSR1 MEF2P39677 819 aa8.76□□□□□ -1.01
LSR1LSR1 IAH1P41734 238 aa8.76□□□□□ -1.01
LSR1LSR1 SPR3P41901 512 aa8.76□□□□□ -1.01
LSR1LSR1 TRF5P48561 642 aaKnown RBP8.76□□□□□ -1.01
LSR1LSR1 AIF1P52923 378 aa8.76□□□□□ -1.01
LSR1LSR1 NRD1P53617 575 aaKnown RBP RIP-Chip data8.76□□□□□ -1.01not detected
LSR1LSR1 CUS2P53830 285 aaPredicted RBP8.76□□□□□ -1.01
LSR1LSR1 ASI2P53895 289 aa8.76□□□□□ -1.01
LSR1LSR1 STP1Q00947 519 aa8.76□□□□□ -1.01
LSR1LSR1 NHX1Q04121 633 aa8.76□□□□□ -1.01
LSR1LSR1 ARA2Q04212 335 aa8.76□□□□□ -1.01
LSR1LSR1 ATG26Q06321 1198 aa8.76□□□□□ -1.01
LSR1LSR1 PIB1Q06651 286 aa8.76□□□□□ -1.01
LSR1LSR1 YDL073WQ07454 984 aa8.76□□□□□ -1.01
LSR1LSR1 AAD4Q07747 329 aa8.76□□□□□ -1.01
LSR1LSR1 APC5Q08683 685 aa8.76□□□□□ -1.01
LSR1LSR1 DDC1Q08949 612 aa8.76□□□□□ -1.01
LSR1LSR1 YOR022CQ12204 715 aa8.76□□□□□ -1.01
LSR1LSR1 PUF2Q12221 1075 aaKnown RBP RIP-Chip data8.76□□□□□ -1.01not detected
LSR1LSR1 LDB17Q12342 491 aa8.76□□□□□ -1.01
LSR1LSR1 ERG20P08524 352 aaKnown RBP8.75□□□□□ -1.01
LSR1LSR1 MET16P18408 261 aaPredicted RBP8.75□□□□□ -1.01
LSR1LSR1 RGR1P19263 1082 aa8.75□□□□□ -1.01
LSR1LSR1 ATP12P22135 325 aa8.75□□□□□ -1.01
LSR1LSR1 RSA4P25382 515 aaKnown RBP8.75□□□□□ -1.01
LSR1LSR1 ZIP1P31111 875 aa8.75□□□□□ -1.01
LSR1LSR1 EAP1P36041 632 aaKnown RBP8.75□□□□□ -1.01
LSR1LSR1 GPT2P36148 743 aa8.75□□□□□ -1.01
LSR1LSR1 YHR182WP38870 785 aa8.75□□□□□ -1.01
LSR1LSR1 SEC28P40509 296 aaKnown RBP8.75□□□□□ -1.01
LSR1LSR1 YGL108CP53139 140 aa8.75□□□□□ -1.01
LSR1LSR1 TMA20P89886 181 aaPredicted RBP8.75□□□□□ -1.01
LSR1LSR1 CSN9Q03981 162 aa8.75□□□□□ -1.01
LSR1LSR1 HRD3Q05787 833 aa8.75□□□□□ -1.01
Retrieved 100 of 5,963 RNA–protein pairs in 26.6 ms