RNA–Protein interactions for RNA: ENSMUST00000098548.7

Scn1b-201, Transcript of Sodium channel subunit beta-1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Scn1b, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1b-201ENSMUST00000098548 Prr15lQ8JZM2 100 aa13,5□□□□□ -0,25
Scn1b-201ENSMUST00000098548 Dnhd1D3Z2X2 4750 aa13,5□□□□□ -0,25
Scn1b-201ENSMUST00000098548 Lrp1Q91ZX7 4545 aaKnown RBP13,5□□□□□ -0,25
Scn1b-201ENSMUST00000098548 Mrpl55Q9CZ83 127 aa13,49□□□□□ -0,25
Scn1b-201ENSMUST00000098548 Reg3aO09037 175 aa13,42□□□□□ -0,26
Scn1b-201ENSMUST00000098548 Gm16253D3Z167 63 aa13,41□□□□□ -0,26
Scn1b-201ENSMUST00000098548 Anapc11Q9CPX9 84 aa13,41□□□□□ -0,26
Scn1b-201ENSMUST00000098548 Samd13D3YUG0 102 aa13,4□□□□□ -0,26
Scn1b-201ENSMUST00000098548 Prr13Q9CQJ5 137 aa13,4□□□□□ -0,26
Scn1b-201ENSMUST00000098548 Apoc4Q61268 124 aa13,39□□□□□ -0,27
Scn1b-201ENSMUST00000098548 Fam229bQ8CF36 80 aa13,38□□□□□ -0,27
Scn1b-201ENSMUST00000098548 Naa38Q9D2U5 125 aa13,37□□□□□ -0,27
Scn1b-201ENSMUST00000098548 A0A286YE49 62 aa13,32□□□□□ -0,28
Scn1b-201ENSMUST00000098548 B230307C23RikQ8BLB2 64 aa13,31□□□□□ -0,28
Scn1b-201ENSMUST00000098548 Gm28539A0A087WSL9 92 aa13,3□□□□□ -0,28
Scn1b-201ENSMUST00000098548 HydinQ80W93 5154 aa13,3□□□□□ -0,28
Scn1b-201ENSMUST00000098548 Spink8Q09TK9 105 aa13,29□□□□□ -0,28
Scn1b-201ENSMUST00000098548 Defa21Q8C1P2 93 aa13,28□□□□□ -0,28
Scn1b-201ENSMUST00000098548 Scgb1b2O35176 93 aa13,25□□□□□ -0,29
Scn1b-201ENSMUST00000098548 Gm2310J3QNJ2 377 aa13,24□□□□□ -0,29
Scn1b-201ENSMUST00000098548 Igkv3-3A0A140T8Q0 119 aa13,24□□□□□ -0,29
Scn1b-201ENSMUST00000098548 Dph3Q8K0W9 82 aa13,24□□□□□ -0,29
Scn1b-201ENSMUST00000098548 BikO70337 150 aa13,23□□□□□ -0,29
Scn1b-201ENSMUST00000098548 Lce1mQ9CR91 182 aa13,21□□□□□ -0,29
Scn1b-201ENSMUST00000098548 Smlr1J3QMJ4 66 aa13,2□□□□□ -0,3
Scn1b-201ENSMUST00000098548 PcloQ9QYX7 5068 aa13,19□□□□□ -0,3
Scn1b-201ENSMUST00000098548 Tmem258P61166 79 aa13,18□□□□□ -0,3
Scn1b-201ENSMUST00000098548 Defb12Q8K4N3 78 aa13,17□□□□□ -0,3
Scn1b-201ENSMUST00000098548 Mycbp2Q7TPH6 4711 aa13,17□□□□□ -0,3
Scn1b-201ENSMUST00000098548 Spaca4Q80ZQ0 127 aa13,13□□□□□ -0,31
Scn1b-201ENSMUST00000098548 D6Ertd527eA0A0N4SWI3 464 aa13,11□□□□□ -0,31
Scn1b-201ENSMUST00000098548 Pcp4P63054 62 aa13,11□□□□□ -0,31
Scn1b-201ENSMUST00000098548 Gm19935A0A1B0GSF9 52 aa13,11□□□□□ -0,31
Scn1b-201ENSMUST00000098548 Atox1O08997 68 aaKnown RBP13,09□□□□□ -0,31
Scn1b-201ENSMUST00000098548 A530084C06RikQ3UTW2 186 aa13,09□□□□□ -0,31
Scn1b-201ENSMUST00000098548 Gm9736A0A1W2P7N1 277 aa13,07□□□□□ -0,32
Scn1b-201ENSMUST00000098548 Coa6Q8BGD8 79 aa13,07□□□□□ -0,32
Scn1b-201ENSMUST00000098548 Cypt15B1AXS0 87 aa13,06□□□□□ -0,32
Scn1b-201ENSMUST00000098548 1700074P13RikQ9D9G7 251 aa13,05□□□□□ -0,32
Scn1b-201ENSMUST00000098548 Rps29P62274 56 aa13,03□□□□□ -0,32
Scn1b-201ENSMUST00000098548 SmcpP15265 143 aa13□□□□□ -0,33
Scn1b-201ENSMUST00000098548 Spint4Q9D263 159 aa12,98□□□□□ -0,33
Scn1b-201ENSMUST00000098548 Pet100P0DJE0 76 aa12,94□□□□□ -0,34
Scn1b-201ENSMUST00000098548 Defb13Q8R2I4 64 aa12,93□□□□□ -0,34
Scn1b-201ENSMUST00000098548 Smim20D3Z7Q2 69 aa12,92□□□□□ -0,34
Scn1b-201ENSMUST00000098548 Rps28P62858 69 aaKnown RBP12,89□□□□□ -0,35
Scn1b-201ENSMUST00000098548 Lrp2A2ARV4 4660 aa12,85□□□□□ -0,35
Scn1b-201ENSMUST00000098548 Gm10267M0QWD8 85 aa12,83□□□□□ -0,36
Scn1b-201ENSMUST00000098548 Herc1E9PZP8 4859 aa12,82□□□□□ -0,36
Scn1b-201ENSMUST00000098548 Serp1Q9Z1W5 66 aa12,76□□□□□ -0,37
Scn1b-201ENSMUST00000098548 Gm18596A0A1W2P860 280 aa12,75□□□□□ -0,37
Scn1b-201ENSMUST00000098548 Gm26620Q9CY65 116 aa12,73□□□□□ -0,37
Scn1b-201ENSMUST00000098548 SnurfQ9WU12 71 aa12,73□□□□□ -0,37
Scn1b-201ENSMUST00000098548 Chtf8P0CG14 533 aa12,7□□□□□ -0,38
Scn1b-201ENSMUST00000098548 Coa5Q99M07 74 aa12,7□□□□□ -0,38
Scn1b-201ENSMUST00000098548 Gm10160F6Y577 67 aa12,69□□□□□ -0,38
Scn1b-201ENSMUST00000098548 Gm10643Q3URG9 111 aa12,63□□□□□ -0,39
Scn1b-201ENSMUST00000098548 Cdc42se1Q8BHL7 80 aa12,62□□□□□ -0,39
Scn1b-201ENSMUST00000098548 Brk1Q91VR8 75 aa12,6□□□□□ -0,39
Scn1b-201ENSMUST00000098548 Gm5965D3Z724 196 aa12,6□□□□□ -0,39
Scn1b-201ENSMUST00000098548 A930033H14RikG5E8X6 103 aa12,46□□□□□ -0,42
Scn1b-201ENSMUST00000098548 Gm11939A2A592 99 aa12,44□□□□□ -0,42
Scn1b-201ENSMUST00000098548 Defb38Q7TNV7 63 aa12,43□□□□□ -0,42
Scn1b-201ENSMUST00000098548 Gm5767A0A0J9YTU8 78 aa12,39□□□□□ -0,43
Scn1b-201ENSMUST00000098548 Gm10197F6QEY5 67 aa12,36□□□□□ -0,43
Scn1b-201ENSMUST00000098548 Gm21798J3QNU5 87 aa12,35□□□□□ -0,43
Scn1b-201ENSMUST00000098548 Gm10999F6Q4M4 69 aa12,35□□□□□ -0,43
Scn1b-201ENSMUST00000098548 Krtap3-2Q9D638 99 aa12,35□□□□□ -0,43
Scn1b-201ENSMUST00000098548 Krtap3-3Q9D7P0 99 aa12,35□□□□□ -0,43
Scn1b-201ENSMUST00000098548 H2al1aQ5M8Q2 105 aa12,34□□□□□ -0,43
Scn1b-201ENSMUST00000098548 Q8BGJ3 129 aa12,32□□□□□ -0,44
Scn1b-201ENSMUST00000098548 Phxr4P15974 95 aa12,28□□□□□ -0,44
Scn1b-201ENSMUST00000098548 Ush2AQ2QI47 5193 aa12,28□□□□□ -0,44
Scn1b-201ENSMUST00000098548 4930507D05RikQ8C9C9 103 aa12,27□□□□□ -0,44
Scn1b-201ENSMUST00000098548 2310034C09RikQ9D746 214 aa12,25□□□□□ -0,45
Scn1b-201ENSMUST00000098548 Gm4491E0CX42 125 aa12,22□□□□□ -0,45
Scn1b-201ENSMUST00000098548 Prm1P02319 51 aa12,22□□□□□ -0,45
Scn1b-201ENSMUST00000098548 H2al1eQ810S6 105 aa12,18□□□□□ -0,46
Scn1b-201ENSMUST00000098548 9230102O04RikA2ASX7 82 aa12,17□□□□□ -0,46
Scn1b-201ENSMUST00000098548 Gm7735D3YX18 52 aa12,17□□□□□ -0,46
Scn1b-201ENSMUST00000098548 Gm20661K7N787 53 aa12,17□□□□□ -0,46
Scn1b-201ENSMUST00000098548 Gm9789Q8BIG3 52 aa12,17□□□□□ -0,46
Scn1b-201ENSMUST00000098548 Krtap15-1Q9QZU5 150 aa12,15□□□□□ -0,46
Scn1b-201ENSMUST00000098548 SptssbQ925E8 76 aa12,12□□□□□ -0,47
Scn1b-201ENSMUST00000098548 2310079G19RikQ9D6L6 185 aa12,12□□□□□ -0,47
Scn1b-201ENSMUST00000098548 Gm9821Q8K076 103 aa12,1□□□□□ -0,47
Scn1b-201ENSMUST00000098548 Hmcn2A2AJ76 5100 aa12,1□□□□□ -0,47
Scn1b-201ENSMUST00000098548 Ndufb1P0DN34 57 aa12,08□□□□□ -0,48
Scn1b-201ENSMUST00000098548 Rpl37Q9D823 97 aa12,05□□□□□ -0,48
Scn1b-201ENSMUST00000098548 H2al1bA0A087WP11 105 aa12,04□□□□□ -0,48
Scn1b-201ENSMUST00000098548 Limd2Q8BGB5 128 aa12,03□□□□□ -0,48
Scn1b-201ENSMUST00000098548 Uqcr11Q9CPX8 56 aa12,02□□□□□ -0,49
Scn1b-201ENSMUST00000098548 Sox16Q62247 57 aa12,01□□□□□ -0,49
Scn1b-201ENSMUST00000098548 Rnase13Q5GAM7 153 aa11,99□□□□□ -0,49
Scn1b-201ENSMUST00000098548 SvipQ3UZP4 77 aa11,98□□□□□ -0,49
Scn1b-201ENSMUST00000098548 Ubr4A2AN08 5180 aa11,95□□□□□ -0,5
Scn1b-201ENSMUST00000098548 2310057N15RikQ9D6T8 200 aa11,95□□□□□ -0,5
Scn1b-201ENSMUST00000098548 Gm10337F7DEP7 55 aa11,91□□□□□ -0,5
Scn1b-201ENSMUST00000098548 4932415D10RikA0A1W2P6U8 4986 aa11,91□□□□□ -0,5
Scn1b-201ENSMUST00000098548 H2al1kJ3QP08 105 aa11,81□□□□□ -0,52
Retrieved 100 of 22,080 RNA–protein pairs in 36,1 ms