Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Gm25239-201ENSMUST00000174915 86 ntBASIC23.12■■□□□ 1.29
Ush2AQ2QI47 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ush2AQ2QI47 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ush2AQ2QI47 Gm24109-201ENSMUST00000175489 103 ntBASIC20.46■□□□□ 0.87
Ush2AQ2QI47 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ush2AQ2QI47 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ush2AQ2QI47 Gm15042-201ENSMUST00000120212 883 ntBASIC19.41■□□□□ 0.7
Ush2AQ2QI47 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ush2AQ2QI47 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ush2AQ2QI47 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ush2AQ2QI47 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.17■□□□□ 0.66
Ush2AQ2QI47 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC19.09■□□□□ 0.65
Ush2AQ2QI47 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
Ush2AQ2QI47 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ush2AQ2QI47 Gm23366-201ENSMUST00000175022 89 ntBASIC19.02■□□□□ 0.64
Ush2AQ2QI47 Gm15045-201ENSMUST00000117359 883 ntBASIC18.92■□□□□ 0.62
Ush2AQ2QI47 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ush2AQ2QI47 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.45■□□□□ 0.54
Ush2AQ2QI47 Gm25238-201ENSMUST00000174914 89 ntBASIC18.44■□□□□ 0.54
Ush2AQ2QI47 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ush2AQ2QI47 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ush2AQ2QI47 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
Ush2AQ2QI47 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Ush2AQ2QI47 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Ush2AQ2QI47 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Ush2AQ2QI47 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Ush2AQ2QI47 Gm25262-201ENSMUST00000174934 133 ntBASIC18■□□□□ 0.47
Ush2AQ2QI47 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Ush2AQ2QI47 Gm26115-201ENSMUST00000175605 87 ntBASIC17.79■□□□□ 0.44
Ush2AQ2QI47 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC17.74■□□□□ 0.43
Ush2AQ2QI47 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC17.72■□□□□ 0.43
Ush2AQ2QI47 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17.64■□□□□ 0.41
Ush2AQ2QI47 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ush2AQ2QI47 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ush2AQ2QI47 Gm8109-201ENSMUST00000194076 746 ntBASIC17.53■□□□□ 0.4
Ush2AQ2QI47 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC17.5■□□□□ 0.39
Ush2AQ2QI47 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC17.48■□□□□ 0.39
Ush2AQ2QI47 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ush2AQ2QI47 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC17.32■□□□□ 0.36
Ush2AQ2QI47 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC17.12■□□□□ 0.33
Ush2AQ2QI47 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ush2AQ2QI47 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ush2AQ2QI47 Rab21-202ENSMUST00000218831 843 ntBASIC17.05■□□□□ 0.32
Ush2AQ2QI47 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC17.04■□□□□ 0.32
Ush2AQ2QI47 Gm24804-201ENSMUST00000174982 85 ntBASIC17.04■□□□□ 0.32
Ush2AQ2QI47 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ush2AQ2QI47 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ush2AQ2QI47 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ush2AQ2QI47 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC16.97■□□□□ 0.31
Ush2AQ2QI47 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ush2AQ2QI47 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ush2AQ2QI47 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC16.91■□□□□ 0.3
Ush2AQ2QI47 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ush2AQ2QI47 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC16.87■□□□□ 0.29
Ush2AQ2QI47 Gm27325-201ENSMUST00000175467 74 ntBASIC16.83■□□□□ 0.29
Ush2AQ2QI47 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ush2AQ2QI47 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC16.79■□□□□ 0.28
Ush2AQ2QI47 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ush2AQ2QI47 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Ush2AQ2QI47 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ush2AQ2QI47 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ush2AQ2QI47 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC16.72■□□□□ 0.27
Ush2AQ2QI47 Zfp131-205ENSMUST00000223812 663 ntBASIC16.71■□□□□ 0.27
Ush2AQ2QI47 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ush2AQ2QI47 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ush2AQ2QI47 Gm17082-201ENSMUST00000166043 1091 ntBASIC16.68■□□□□ 0.26
Ush2AQ2QI47 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC16.62■□□□□ 0.25
Ush2AQ2QI47 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ush2AQ2QI47 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ush2AQ2QI47 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ush2AQ2QI47 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16.51■□□□□ 0.23
Ush2AQ2QI47 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Ush2AQ2QI47 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ush2AQ2QI47 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ush2AQ2QI47 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ush2AQ2QI47 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ush2AQ2QI47 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC16.44■□□□□ 0.22
Ush2AQ2QI47 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ush2AQ2QI47 Gm5987-201ENSMUST00000196433 1151 ntBASIC16.43■□□□□ 0.22
Ush2AQ2QI47 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ush2AQ2QI47 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC16.4■□□□□ 0.22
Ush2AQ2QI47 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ush2AQ2QI47 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Ush2AQ2QI47 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ush2AQ2QI47 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ush2AQ2QI47 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC16.35■□□□□ 0.21
Ush2AQ2QI47 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC16.33■□□□□ 0.2
Ush2AQ2QI47 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC16.32■□□□□ 0.2
Ush2AQ2QI47 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ush2AQ2QI47 Gm27322-201ENSMUST00000184007 104 ntBASIC16.32■□□□□ 0.2
Ush2AQ2QI47 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ush2AQ2QI47 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ush2AQ2QI47 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ush2AQ2QI47 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ush2AQ2QI47 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC16.26■□□□□ 0.19
Ush2AQ2QI47 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ush2AQ2QI47 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ush2AQ2QI47 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC16.23■□□□□ 0.19
Ush2AQ2QI47 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC16.21■□□□□ 0.19
Ush2AQ2QI47 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms