Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Gm25239-201ENSMUST00000174915 86 ntBASIC22,66■■□□□ 1,22
Ubr4A2AN08 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21,03■□□□□ 0,96
Ubr4A2AN08 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20,68■□□□□ 0,9
Ubr4A2AN08 Gm24109-201ENSMUST00000175489 103 ntBASIC20,07■□□□□ 0,8
Ubr4A2AN08 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19,3■□□□□ 0,68
Ubr4A2AN08 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19,13■□□□□ 0,65
Ubr4A2AN08 Gm15042-201ENSMUST00000120212 883 ntBASIC19■□□□□ 0,63
Ubr4A2AN08 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC18,92■□□□□ 0,62
Ubr4A2AN08 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18,82■□□□□ 0,6
Ubr4A2AN08 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18,79■□□□□ 0,6
Ubr4A2AN08 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18,76■□□□□ 0,59
Ubr4A2AN08 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18,75■□□□□ 0,59
Ubr4A2AN08 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18,7■□□□□ 0,58
Ubr4A2AN08 Gm23366-201ENSMUST00000175022 89 ntBASIC18,61■□□□□ 0,57
Ubr4A2AN08 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18,59■□□□□ 0,57
Ubr4A2AN08 Gm15045-201ENSMUST00000117359 883 ntBASIC18,43■□□□□ 0,54
Ubr4A2AN08 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18,11■□□□□ 0,49
Ubr4A2AN08 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18,1■□□□□ 0,49
Ubr4A2AN08 Gm25238-201ENSMUST00000174914 89 ntBASIC18,04■□□□□ 0,48
Ubr4A2AN08 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC17,9■□□□□ 0,46
Ubr4A2AN08 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC17,88■□□□□ 0,45
Ubr4A2AN08 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC17,85■□□□□ 0,45
Ubr4A2AN08 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC17,72■□□□□ 0,43
Ubr4A2AN08 Gm25262-201ENSMUST00000174934 133 ntBASIC17,68■□□□□ 0,42
Ubr4A2AN08 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17,67■□□□□ 0,42
Ubr4A2AN08 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17,64■□□□□ 0,41
Ubr4A2AN08 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC17,59■□□□□ 0,41
Ubr4A2AN08 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC17,51■□□□□ 0,39
Ubr4A2AN08 Gm26115-201ENSMUST00000175605 87 ntBASIC17,42■□□□□ 0,38
Ubr4A2AN08 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC17,41■□□□□ 0,38
Ubr4A2AN08 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC17,36■□□□□ 0,37
Ubr4A2AN08 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17,28■□□□□ 0,36
Ubr4A2AN08 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC17,24■□□□□ 0,35
Ubr4A2AN08 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC17,24■□□□□ 0,35
Ubr4A2AN08 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC17,17■□□□□ 0,34
Ubr4A2AN08 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC17,16■□□□□ 0,34
Ubr4A2AN08 Gm8109-201ENSMUST00000194076 746 ntBASIC17,15■□□□□ 0,34
Ubr4A2AN08 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC17,13■□□□□ 0,33
Ubr4A2AN08 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17,01■□□□□ 0,31
Ubr4A2AN08 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC16,96■□□□□ 0,31
Ubr4A2AN08 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC16,91■□□□□ 0,3
Ubr4A2AN08 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC16,84■□□□□ 0,29
Ubr4A2AN08 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC16,78■□□□□ 0,28
Ubr4A2AN08 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC16,77■□□□□ 0,28
Ubr4A2AN08 Gm24804-201ENSMUST00000174982 85 ntBASIC16,73■□□□□ 0,27
Ubr4A2AN08 Rab21-202ENSMUST00000218831 843 ntBASIC16,72■□□□□ 0,27
Ubr4A2AN08 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC16,7■□□□□ 0,26
Ubr4A2AN08 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC16,69■□□□□ 0,26
Ubr4A2AN08 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC16,68■□□□□ 0,26
Ubr4A2AN08 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC16,61■□□□□ 0,25
Ubr4A2AN08 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC16,58■□□□□ 0,24
Ubr4A2AN08 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC16,56■□□□□ 0,24
Ubr4A2AN08 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC16,54■□□□□ 0,24
Ubr4A2AN08 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC16,54■□□□□ 0,24
Ubr4A2AN08 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC16,53■□□□□ 0,24
Ubr4A2AN08 Gm5987-201ENSMUST00000196433 1151 ntBASIC16,51■□□□□ 0,23
Ubr4A2AN08 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC16,5■□□□□ 0,23
Ubr4A2AN08 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC16,46■□□□□ 0,22
Ubr4A2AN08 Gm27325-201ENSMUST00000175467 74 ntBASIC16,42■□□□□ 0,22
Ubr4A2AN08 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC16,41■□□□□ 0,22
Ubr4A2AN08 Zfp131-205ENSMUST00000223812 663 ntBASIC16,4■□□□□ 0,22
Ubr4A2AN08 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC16,34■□□□□ 0,21
Ubr4A2AN08 Gm17082-201ENSMUST00000166043 1091 ntBASIC16,34■□□□□ 0,21
Ubr4A2AN08 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC16,33■□□□□ 0,2
Ubr4A2AN08 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC16,33■□□□□ 0,2
Ubr4A2AN08 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC16,31■□□□□ 0,2
Ubr4A2AN08 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC16,29■□□□□ 0,2
Ubr4A2AN08 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC16,29■□□□□ 0,2
Ubr4A2AN08 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC16,28■□□□□ 0,2
Ubr4A2AN08 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC16,26■□□□□ 0,19
Ubr4A2AN08 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16,23■□□□□ 0,19
Ubr4A2AN08 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC16,15■□□□□ 0,18
Ubr4A2AN08 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC16,14■□□□□ 0,17
Ubr4A2AN08 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16,13■□□□□ 0,17
Ubr4A2AN08 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC16,13■□□□□ 0,17
Ubr4A2AN08 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC16,12■□□□□ 0,17
Ubr4A2AN08 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC16,12■□□□□ 0,17
Ubr4A2AN08 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC16,07■□□□□ 0,16
Ubr4A2AN08 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC16,07■□□□□ 0,16
Ubr4A2AN08 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC16,07■□□□□ 0,16
Ubr4A2AN08 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC16,06■□□□□ 0,16
Ubr4A2AN08 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC16,05■□□□□ 0,16
Ubr4A2AN08 Gm15039-201ENSMUST00000118914 875 ntBASIC16,05■□□□□ 0,16
Ubr4A2AN08 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC16,04■□□□□ 0,16
Ubr4A2AN08 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16,04■□□□□ 0,16
Ubr4A2AN08 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC16,02■□□□□ 0,16
Ubr4A2AN08 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC16,02■□□□□ 0,15
Ubr4A2AN08 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16,01■□□□□ 0,15
Ubr4A2AN08 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC16,01■□□□□ 0,15
Ubr4A2AN08 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC15,98■□□□□ 0,15
Ubr4A2AN08 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC15,98■□□□□ 0,15
Ubr4A2AN08 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC15,97■□□□□ 0,15
Ubr4A2AN08 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC15,96■□□□□ 0,14
Ubr4A2AN08 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC15,95■□□□□ 0,14
Ubr4A2AN08 Gm27322-201ENSMUST00000184007 104 ntBASIC15,93■□□□□ 0,14
Ubr4A2AN08 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC15,93■□□□□ 0,14
Ubr4A2AN08 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC15,92■□□□□ 0,14
Ubr4A2AN08 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC15,87■□□□□ 0,13
Ubr4A2AN08 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC15,87■□□□□ 0,13
Ubr4A2AN08 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC15,85■□□□□ 0,13
Retrieved 100 of 76,532 protein–RNA pairs in 12,3 ms