RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Bri3P28662 125 aa11.1□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 CdsnQ7TPC1 561 aa11.1□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 H2al1bA0A087WP11 105 aa11.1□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Obox2E9PXV9 151 aa11.1□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Crip2Q9DCT8 208 aaKnown RBP11.1□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 D730001G18RikA0A087WQU7 115 aa11.09□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 NpwA0A1L1STR8 176 aa11.09□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 Col6a3E9PWQ3 3284 aa11.09□□□□□ -0.63
Ccdc88b-201ENSMUST00000113440 U90926O08546 118 aa11.08□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 TeppQ6IMH0 216 aa11.08□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Trbv13-2A0A140T8N6 113 aa11.08□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 4930432M17RikQ3V0W9 174 aa11.07□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Ighv2-9-1A0A075B697 116 aa11.07□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Serp1Q9Z1W5 66 aa11.07□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 A0A286YCN5 57 aa11.06□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Ndufs5Q99LY9 106 aa11.06□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Wfdc12Q9JHY3 85 aa11.06□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Shisa2Q8QZV2 295 aa11.05□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Igkv1-117A0A140T8M0 119 aa11.04□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Gm10549Q3URY4 149 aa11.04□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Igkv1-110A0A0B4J1I0 119 aa11.04□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 FryE9Q8I9 3020 aa11.03□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Gcn1E9PVA8 2671 aaKnown RBP11.03□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Defb45Q3V490 66 aa11.03□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Fam19a5Q91WE9 132 aa11.03□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Gm10845Q3UNY9 185 aa11.03□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Znf706Q9D115 76 aaKnown RBP11.03□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 4930556J24RikQ9D4U7 146 aa11.02□□□□□ -0.64
Ccdc88b-201ENSMUST00000113440 Gm5142Q8C5X9 133 aa11.02□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Gpha2Q925Q5 128 aa11.02□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 3110070M22RikQ9DAQ7 118 aa11.01□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 P06329 120 aa11.01□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 H2al1aQ5M8Q2 105 aa11.01□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 H2al1eQ810S6 105 aa11.01□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Ighv10-3A0A075B5T6 119 aa11□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 A0A286YE49 62 aa11□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Trav14-1A0A0G2JF94 121 aa11□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Gm11011D3Z3L9 86 aa10.99□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 ScxQ64124 207 aa10.99□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Gm3250E9Q1M3 230 aa10.98□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Sprr2jO70561 109 aa10.98□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Wdfy4E9Q2M9 3149 aa10.98□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 SycnQ8VCK7 134 aa10.98□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Gm4707V9GXN5 68 aa10.98□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 9230102O04RikA2ASX7 82 aa10.96□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 Wdfy3Q6VNB8 3508 aa10.96□□□□□ -0.65
Ccdc88b-201ENSMUST00000113440 UqcrqQ9CQ69 82 aa10.96□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Krtap26-1Q9D7N2 215 aa10.96□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Apoc4Q61268 124 aa10.96□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Csdc2Q91YQ3 154 aa10.96□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 PscaP57096 123 aa10.95□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Ankrd11E9Q4F7 2643 aa10.95□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Ankrd17Q99NH0 2603 aaKnown RBP10.95□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Celsr1O35161 3034 aa10.94□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 P84750 121 aa10.94□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Hectd1Q69ZR2 2618 aaKnown RBP10.92□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 BptfA2A654 3036 aaKnown RBP10.92□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Defb40Q70KL2 73 aa10.92□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 PtprqP0C5E4 2300 aa10.92□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Defb10Q8R2I8 73 aa10.91□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Igkv8-30A0A140T8M3 121 aa10.91□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Ntn5Q3UQ22 452 aa10.91□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Nupr2Q497P3 102 aa10.9□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 VcanQ62059 3357 aa10.9□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Lelp1Q9DAE3 120 aa10.9□□□□□ -0.66
Ccdc88b-201ENSMUST00000113440 Cep192E9Q4Y4 2514 aaKnown RBP10.9□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Odf3l2Q3TZ65 277 aa10.89□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Krtap24-1G3X9A2 248 aa10.89□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Ifitm6A0A1B0GS75 124 aa10.89□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 SnurfQ9WU12 71 aa10.89□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 PolqQ8CGS6 2544 aa10.88□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Gm5153P01627 120 aa10.88□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Ighv1-56A0A0A6YXG2 117 aa10.88□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Ighv8-13A0A075B5Y0 101 aa10.88□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Rps28P62858 69 aaKnown RBP10.87□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Zfand2aQ9JII7 171 aa10.87□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Gm9887F6RFI0 207 aa10.86□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Igkv3-12A0A140T8P0 119 aa10.86□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 1700074P13RikQ9D9G7 251 aa10.84□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 Dmxl2Q8BPN8 3032 aa10.84□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 CrygaP04345 174 aa10.84□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 4930518I15RikQ3V2W7 57 aa10.84□□□□□ -0.67
Ccdc88b-201ENSMUST00000113440 FlnaQ8BTM8 2647 aaKnown RBP10.83□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Usp9yF8VPU6 2556 aa10.83□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 H2al1mQ9DAD9 105 aa10.82□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Gm17509Q9CZ61 145 aa10.82□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Sostdc1Q9CQN4 206 aa10.81□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Ighv2-9A0A075B5Q5 116 aa10.81□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 H2al1kJ3QP08 105 aa10.8□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Gm26661M0QWV4 156 aa10.8□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Prr13Q9CQJ5 137 aa10.8□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Gm9195A0A140LHT4 2805 aa10.8□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 FlnbQ80X90 2602 aaKnown RBP10.79□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Wfdc13Q5DQQ6 81 aa10.79□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Gm43218A0A0G2JGT0 114 aa10.78□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 MobpQ9D2P8 170 aa10.78□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 DmdP11531 3678 aa10.78□□□□□ -0.68
Ccdc88b-201ENSMUST00000113440 Gm10570F6VB42 170 aa10.77□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 C130032M10RikQ8C888 123 aa10.77□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Gm16485Q8C4B7 115 aa10.77□□□□□ -0.69
Retrieved 100 of 22,080 RNA–protein pairs in 112.1 ms