RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Rhox8Q6VSS7 320 aa28,02■■■□□ 2,08
Ccdc88b-201ENSMUST00000113440 NischQ80TM9 1593 aa26,36■■□□□ 1,81
Ccdc88b-201ENSMUST00000113440 Rpgrip1Q9EPQ2 1331 aa25,45■■□□□ 1,66
Ccdc88b-201ENSMUST00000113440 Ccdc136Q3TVA9 1136 aa25,3■■□□□ 1,64
Ccdc88b-201ENSMUST00000113440 Ehmt2Q9Z148 1263 aaKnown RBP25,26■■□□□ 1,63
Ccdc88b-201ENSMUST00000113440 Abcc9P70170 1546 aa24,92■■□□□ 1,58
Ccdc88b-201ENSMUST00000113440 Cngb1E1AZ71 1325 aa24,75■■□□□ 1,55
Ccdc88b-201ENSMUST00000113440 Esf1Q3V1V3 845 aaKnown RBP24,7■■□□□ 1,54
Ccdc88b-201ENSMUST00000113440 Trim41Q5NCC3 630 aa24,64■■□□□ 1,53
Ccdc88b-201ENSMUST00000113440 Gab3Q8BSM5 595 aa24,43■■□□□ 1,5
Ccdc88b-201ENSMUST00000113440 Abcc8B2RUS7 1588 aa24,4■■□□□ 1,5
Ccdc88b-201ENSMUST00000113440 Ccdc180J3QNE4 1664 aa24,31■■□□□ 1,48
Ccdc88b-201ENSMUST00000113440 Las1lA2BE28 776 aaKnown RBP24,24■■□□□ 1,47
Ccdc88b-201ENSMUST00000113440 Rtl1Q7M732 1744 aa24,16■■□□□ 1,46
Ccdc88b-201ENSMUST00000113440 Acin1Q9JIX8 1338 aaKnown RBP24,05■■□□□ 1,44
Ccdc88b-201ENSMUST00000113440 HrcG5E8J6 738 aa24,01■■□□□ 1,43
Ccdc88b-201ENSMUST00000113440 Npm2Q80W85 207 aa23,99■■□□□ 1,43
Ccdc88b-201ENSMUST00000113440 Zeb1Q64318 1117 aa23,93■■□□□ 1,42
Ccdc88b-201ENSMUST00000113440 Gm35339A0A140LHH9 1649 aa23,9■■□□□ 1,42
Ccdc88b-201ENSMUST00000113440 Myt1lP97500 1187 aa23,89■■□□□ 1,42
Ccdc88b-201ENSMUST00000113440 Zcchc6Q5BLK4 1491 aaKnown RBP23,88■■□□□ 1,41
Ccdc88b-201ENSMUST00000113440 Wdr66E9Q743 1299 aa23,75■■□□□ 1,39
Ccdc88b-201ENSMUST00000113440 Ube2uB1AUC4 352 aa23,51■■□□□ 1,35
Ccdc88b-201ENSMUST00000113440 UbtfP25976 765 aaKnown RBP23,48■■□□□ 1,35
Ccdc88b-201ENSMUST00000113440 Il27Q8K3I6 234 aa23,36■■□□□ 1,33
Ccdc88b-201ENSMUST00000113440 Pelp1Q9DBD5 1123 aaKnown RBP23,35■■□□□ 1,33
Ccdc88b-201ENSMUST00000113440 NefmP08553 848 aa23,34■■□□□ 1,33
Ccdc88b-201ENSMUST00000113440 Pcgf6Q99NA9 353 aa23,23■■□□□ 1,31
Ccdc88b-201ENSMUST00000113440 Rb1cc1Q9ESK9 1588 aa23,14■■□□□ 1,3
Ccdc88b-201ENSMUST00000113440 CenpbP27790 599 aa23,09■■□□□ 1,29
Ccdc88b-201ENSMUST00000113440 Dcaf1Q80TR8 1506 aa23,03■■□□□ 1,28
Ccdc88b-201ENSMUST00000113440 Supt5hO55201 1082 aaKnown RBP22,92■■□□□ 1,26
Ccdc88b-201ENSMUST00000113440 Ap3b1Q9Z1T1 1105 aa22,92■■□□□ 1,26
Ccdc88b-201ENSMUST00000113440 Chic1Q8CBW7 227 aa22,89■■□□□ 1,25
Ccdc88b-201ENSMUST00000113440 Mier1Q5UAK0 511 aa22,86■■□□□ 1,25
Ccdc88b-201ENSMUST00000113440 Brd4Q9ESU6 1400 aaKnown RBP22,8■■□□□ 1,24
Ccdc88b-201ENSMUST00000113440 NacadQ5SWP3 1504 aa22,77■■□□□ 1,24
Ccdc88b-201ENSMUST00000113440 Cep164Q5DU05 1446 aa22,76■■□□□ 1,23
Ccdc88b-201ENSMUST00000113440 Ppargc1bQ8VHJ7 1014 aa22,74■■□□□ 1,23
Ccdc88b-201ENSMUST00000113440 Baz1aO88379 1555 aa22,67■■□□□ 1,22
Ccdc88b-201ENSMUST00000113440 Fam50aQ9WV03 339 aaKnown RBP22,67■■□□□ 1,22
Ccdc88b-201ENSMUST00000113440 Myt1Q8CFC2 1127 aa22,67■■□□□ 1,22
Ccdc88b-201ENSMUST00000113440 Cdk11bP24788 784 aaKnown RBP22,58■■□□□ 1,2
Ccdc88b-201ENSMUST00000113440 Plekhg3Q4VAC9 1341 aa22,55■■□□□ 1,2
Ccdc88b-201ENSMUST00000113440 Npm1Q61937 292 aaKnown RBP22,53■■□□□ 1,2
Ccdc88b-201ENSMUST00000113440 Stra8P70278 393 aa22,53■■□□□ 1,2
Ccdc88b-201ENSMUST00000113440 Kdm5dQ62240 1548 aa22,52■■□□□ 1,2
Ccdc88b-201ENSMUST00000113440 TonslQ6NZL6 1363 aa22,48■■□□□ 1,19
Ccdc88b-201ENSMUST00000113440 Nop58Q6DFW4 536 aaKnown RBP22,46■■□□□ 1,19
Ccdc88b-201ENSMUST00000113440 Slc24a1Q91WD8 1130 aa22,44■■□□□ 1,18
Ccdc88b-201ENSMUST00000113440 NclP09405 707 aaKnown RBP22,35■■□□□ 1,17
Ccdc88b-201ENSMUST00000113440 Lmod2Q3UHZ5 550 aa22,35■■□□□ 1,17
Ccdc88b-201ENSMUST00000113440 Neurod1Q60867 357 aa22,31■■□□□ 1,16
Ccdc88b-201ENSMUST00000113440 Amer1Q7TS75 1132 aa22,29■■□□□ 1,16
Ccdc88b-201ENSMUST00000113440 Clip1Q922J3 1391 aa22,23■■□□□ 1,15
Ccdc88b-201ENSMUST00000113440 Sall2Q9QX96 1004 aa22,22■■□□□ 1,15
Ccdc88b-201ENSMUST00000113440 Golga3P55937 1487 aa22,21■■□□□ 1,15
Ccdc88b-201ENSMUST00000113440 Tnnt3Q9QZ47 272 aa22,2■■□□□ 1,14
Ccdc88b-201ENSMUST00000113440 Rsf1E9PWW9 1441 aaKnown RBP22,18■■□□□ 1,14
Ccdc88b-201ENSMUST00000113440 Eid3Q3V124 375 aa22,15■■□□□ 1,14
Ccdc88b-201ENSMUST00000113440 ClspnQ80YR7 1315 aa22,14■■□□□ 1,13
Ccdc88b-201ENSMUST00000113440 Ubl4bQ9CQ84 188 aa22,1■■□□□ 1,13
Ccdc88b-201ENSMUST00000113440 ScribQ80U72 1612 aa22,02■■□□□ 1,12
Ccdc88b-201ENSMUST00000113440 Mapk8ip2Q9ERE9 830 aa21,96■■□□□ 1,11
Ccdc88b-201ENSMUST00000113440 NrdcQ8BHG1 1161 aa21,95■■□□□ 1,1
Ccdc88b-201ENSMUST00000113440 Ccdc88bQ4QRL3 1481 aa21,93■■□□□ 1,1
Ccdc88b-201ENSMUST00000113440 Zbtb7cQ8VCZ7 619 aa21,91■■□□□ 1,1
Ccdc88b-201ENSMUST00000113440 Eif5bQ05D44 1216 aaKnown RBP21,86■■□□□ 1,09
Ccdc88b-201ENSMUST00000113440 Os9Q8K2C7 672 aa21,85■■□□□ 1,09
Ccdc88b-201ENSMUST00000113440 Sycp2Q9CUU3 1500 aa21,85■■□□□ 1,09
Ccdc88b-201ENSMUST00000113440 Kif15Q6P9L6 1387 aa21,83■■□□□ 1,09
Ccdc88b-201ENSMUST00000113440 Anp32bQ9EST5 272 aaKnown RBP21,82■■□□□ 1,08
Ccdc88b-201ENSMUST00000113440 Ttbk1Q6PCN3 1308 aa21,79■■□□□ 1,08
Ccdc88b-201ENSMUST00000113440 Rtl5Q5DTT4 599 aa21,79■■□□□ 1,08
Ccdc88b-201ENSMUST00000113440 Crybg2B7ZCC2 1516 aa21,76■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Aebp2Q9Z248 504 aaKnown RBP21,75■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Cecr2E9Q2Z1 1453 aa21,75■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Fkbp15Q6P9Q6 1216 aaKnown RBP21,74■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Setd5Q5XJV7 1441 aa21,74■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Ifnlr1Q8CGK5 535 aa21,74■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 BlmO88700 1416 aa21,73■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Smarca2Q6DIC0 1577 aa21,73■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Hnrnpul2Q00PI9 745 aaKnown RBP21,72■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Anks4bQ8K3X6 423 aa21,7■■□□□ 1,07
Ccdc88b-201ENSMUST00000113440 Ercc6F8VPZ5 1481 aa21,7■■□□□ 1,06
Ccdc88b-201ENSMUST00000113440 Csrnp3P59055 597 aa21,68■■□□□ 1,06
Ccdc88b-201ENSMUST00000113440 4933416C03RikQ3V063 378 aa21,66■■□□□ 1,06
Ccdc88b-201ENSMUST00000113440 Gm38655A0A286YDK6 273 aa21,64■■□□□ 1,05
Ccdc88b-201ENSMUST00000113440 DiexfQ8BTT6 772 aaKnown RBP21,62■■□□□ 1,05
Ccdc88b-201ENSMUST00000113440 Chic2Q9D9G3 165 aa21,61■■□□□ 1,05
Ccdc88b-201ENSMUST00000113440 CftrP26361 1476 aa21,58■■□□□ 1,05
Ccdc88b-201ENSMUST00000113440 Ccdc18Q640L5 1455 aa21,57■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 Ccer2J3QPU5 274 aa21,57■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 4930567H17RikQ3V0K5 233 aa21,56■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 Zbtb4Q5F293 982 aa21,55■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 NeflP08551 543 aa21,54■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 Eea1Q8BL66 1411 aa21,54■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 Pds5bQ4VA53 1446 aaKnown RBP21,52■■□□□ 1,04
Ccdc88b-201ENSMUST00000113440 Synj1Q8CHC4 1574 aa21,5■■□□□ 1,03
Ccdc88b-201ENSMUST00000113440 Cep162Q6ZQ06 1403 aa21,5■■□□□ 1,03
Retrieved 100 of 22,080 RNA–protein pairs in 20,7 ms