Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Gm25239-201ENSMUST00000174915 86 ntBASIC42.47■■■■■ 4.39
Col6a3E9PWQ3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.77■■■■□ 3.96
Col6a3E9PWQ3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
Col6a3E9PWQ3 Gm24109-201ENSMUST00000175489 103 ntBASIC37.6■■■■□ 3.61
Col6a3E9PWQ3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.4
Col6a3E9PWQ3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.06■■■■□ 3.36
Col6a3E9PWQ3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.82■■■■□ 3.33
Col6a3E9PWQ3 Gm15042-201ENSMUST00000120212 883 ntBASIC35.76■■■■□ 3.32
Col6a3E9PWQ3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
Col6a3E9PWQ3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.36■■■■□ 3.25
Col6a3E9PWQ3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
Col6a3E9PWQ3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
Col6a3E9PWQ3 Gm23366-201ENSMUST00000175022 89 ntBASIC35.15■■■■□ 3.22
Col6a3E9PWQ3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.08■■■■□ 3.21
Col6a3E9PWQ3 Gm15045-201ENSMUST00000117359 883 ntBASIC35.05■■■■□ 3.2
Col6a3E9PWQ3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.98■■■■□ 3.19
Col6a3E9PWQ3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.18■■■■□ 3.06
Col6a3E9PWQ3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Col6a3E9PWQ3 Gm25238-201ENSMUST00000174914 89 ntBASIC34.03■■■■□ 3.04
Col6a3E9PWQ3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
Col6a3E9PWQ3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
Col6a3E9PWQ3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.36■■■□□ 2.93
Col6a3E9PWQ3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Col6a3E9PWQ3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.3■■■□□ 2.92
Col6a3E9PWQ3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.27■■■□□ 2.92
Col6a3E9PWQ3 Gm25262-201ENSMUST00000174934 133 ntBASIC33.26■■■□□ 2.92
Col6a3E9PWQ3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.2■■■□□ 2.91
Col6a3E9PWQ3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.87■■■□□ 2.85
Col6a3E9PWQ3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
Col6a3E9PWQ3 Gm26115-201ENSMUST00000175605 87 ntBASIC32.81■■■□□ 2.84
Col6a3E9PWQ3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.7■■■□□ 2.83
Col6a3E9PWQ3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.66■■■□□ 2.82
Col6a3E9PWQ3 Gm8109-201ENSMUST00000194076 746 ntBASIC32.46■■■□□ 2.79
Col6a3E9PWQ3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Col6a3E9PWQ3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC32.33■■■□□ 2.77
Col6a3E9PWQ3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Col6a3E9PWQ3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Col6a3E9PWQ3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.15■■■□□ 2.74
Col6a3E9PWQ3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.9■■■□□ 2.7
Col6a3E9PWQ3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.65■■■□□ 2.66
Col6a3E9PWQ3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Col6a3E9PWQ3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
Col6a3E9PWQ3 Rab21-202ENSMUST00000218831 843 ntBASIC31.48■■■□□ 2.63
Col6a3E9PWQ3 Gm24804-201ENSMUST00000174982 85 ntBASIC31.46■■■□□ 2.63
Col6a3E9PWQ3 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC31.43■■■□□ 2.62
Col6a3E9PWQ3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.36■■■□□ 2.61
Col6a3E9PWQ3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col6a3E9PWQ3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col6a3E9PWQ3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col6a3E9PWQ3 Gm27325-201ENSMUST00000175467 74 ntBASIC31.32■■■□□ 2.6
Col6a3E9PWQ3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Col6a3E9PWQ3 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Col6a3E9PWQ3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Col6a3E9PWQ3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Col6a3E9PWQ3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.15■■■□□ 2.58
Col6a3E9PWQ3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC31.11■■■□□ 2.57
Col6a3E9PWQ3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
Col6a3E9PWQ3 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Col6a3E9PWQ3 Zfp131-205ENSMUST00000223812 663 ntBASIC31.02■■■□□ 2.56
Col6a3E9PWQ3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Col6a3E9PWQ3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Col6a3E9PWQ3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Col6a3E9PWQ3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Col6a3E9PWQ3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.92■■■□□ 2.54
Col6a3E9PWQ3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Col6a3E9PWQ3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
Col6a3E9PWQ3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
Col6a3E9PWQ3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Col6a3E9PWQ3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC30.76■■■□□ 2.52
Col6a3E9PWQ3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col6a3E9PWQ3 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.71■■■□□ 2.51
Col6a3E9PWQ3 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.69■■■□□ 2.5
Col6a3E9PWQ3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col6a3E9PWQ3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.62■■■□□ 2.49
Col6a3E9PWQ3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col6a3E9PWQ3 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Col6a3E9PWQ3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.5■■■□□ 2.47
Col6a3E9PWQ3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col6a3E9PWQ3 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col6a3E9PWQ3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col6a3E9PWQ3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Col6a3E9PWQ3 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC30.35■■■□□ 2.45
Col6a3E9PWQ3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
Col6a3E9PWQ3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Col6a3E9PWQ3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.3■■■□□ 2.44
Col6a3E9PWQ3 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Col6a3E9PWQ3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.21■■■□□ 2.43
Col6a3E9PWQ3 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.21■■■□□ 2.43
Col6a3E9PWQ3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Col6a3E9PWQ3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
Col6a3E9PWQ3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.17■■■□□ 2.42
Col6a3E9PWQ3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.14■■■□□ 2.42
Col6a3E9PWQ3 Gm27322-201ENSMUST00000184007 104 ntBASIC30.13■■■□□ 2.41
Col6a3E9PWQ3 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col6a3E9PWQ3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.1■■■□□ 2.41
Col6a3E9PWQ3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col6a3E9PWQ3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col6a3E9PWQ3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Col6a3E9PWQ3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Col6a3E9PWQ3 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC30.02■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms