RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Igkv4-53A0A0G2JFC6 119 aa9.6□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Gm26661M0QWV4 156 aa9.6□□□□□ -0.87
Clcn3-204ENSMUST00000110301 CtrlQ9ER05 264 aa9.6□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Krtap27-1E9PX37 202 aa9.6□□□□□ -0.87
Clcn3-204ENSMUST00000110301 SelenowP63300 88 aa9.6□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Igkv4-79A0A075B5L8 119 aa9.59□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Gm7102J3QQ10 178 aa9.59□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Lst1O08843 95 aa9.59□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Igfn1Q3KNY0 2849 aa9.59□□□□□ -0.87
Clcn3-204ENSMUST00000110301 Gm11565A2A4M7 156 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Ube2d3P61079 147 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Ube2d2P62838 147 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Trav9n-4A0A075B631 113 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Foxc1Q61572 553 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Samd13D3YUG0 102 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Rnf152Q8BG47 203 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 LrbaQ9ESE1 2856 aa9.58□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Igkv4-72A0A0B4J1I4 117 aa9.57□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Igkv4-54A0A0G2JES9 117 aa9.57□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Ighv2-6-8A0A0A6YWY9 116 aa9.57□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm10518F6UQQ9 182 aa9.57□□□□□ -0.88
Clcn3-204ENSMUST00000110301 PemtQ61907 199 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Trav11A0A0B4J1J9 114 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm16381A0A1Y7VKT9 73 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Eif4ebp1Q60876 117 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 2010109I03RikQ9CQ11 111 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm10322F7D7I4 111 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 P01823 113 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 CdsnQ7TPC1 561 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm9747Q810H1 104 aa9.56□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm28374F6SG70 93 aa9.55□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm21748Q3UE70 102 aa9.55□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gatd1Q8BFQ8 220 aa9.55□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Cox7cP17665 63 aa9.55□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Ube2wQ8VDW4 151 aa9.55□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Lage3Q9CR70 148 aa9.55□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm17472A0A075B683 117 aa9.54□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Krtap26-1Q9D7N2 215 aa9.54□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Ighv1-62-1A0A075B5U3 116 aa9.54□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Tmem223Q9CQE2 199 aaKnown RBP9.54□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Igkv4-61A0A0G2JH00 117 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Hbb-b2P02089 147 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 SrarpQ3ULG3 163 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Trbv13-2A0A140T8N6 113 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Ccdc179J3QM76 67 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm10735Q3US96 136 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Cdc42se2Q8BGH7 84 aa9.53□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Lama5Q61001 3718 aa9.52□□□□□ -0.88
Clcn3-204ENSMUST00000110301 Gm10647E9Q8X0 124 aa9.52□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Defa28D3Z1V9 94 aa9.52□□□□□ -0.89
Clcn3-204ENSMUST00000110301 9430069I07RikQ9CX21 111 aa9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Smg1Q8BKX6 3658 aaKnown RBP9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Ube2d1P61080 147 aaKnown RBP9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Camk2n2Q78WH7 79 aa9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 9230102O04RikA2ASX7 82 aa9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Defa25Q5G864 92 aa9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Trav13n-2A0A0G2JF93 110 aa9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Igkv1-88A0A140T8N1 120 aa9.51□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Pkd1l1Q8R526 2615 aa9.5□□□□□ -0.89
Clcn3-204ENSMUST00000110301 A0A286YCN5 57 aa9.5□□□□□ -0.89
Clcn3-204ENSMUST00000110301 1700010B08RikQ9DAI7 102 aa9.49□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Ly6gP35461 111 aa9.49□□□□□ -0.89
Clcn3-204ENSMUST00000110301 9530053A07RikE9PVG8 2581 aa9.49□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Defa7P50705 93 aa9.48□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Cox7b2Q9D2H1 82 aa9.47□□□□□ -0.89
Clcn3-204ENSMUST00000110301 P01755 137 aa9.47□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Trav4d-3A0A075B625 110 aa9.46□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Rbmy1bQ60990 380 aa9.46□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Ufsp1Q9CZP0 217 aa9.46□□□□□ -0.89
Clcn3-204ENSMUST00000110301 Lamtor3O88653 124 aa9.46□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Trav4-3A0A0B4J1K1 110 aa9.46□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Spink4O35679 86 aa9.46□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Smim1P0C8K7 78 aa9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Crip2Q9DCT8 208 aaKnown RBP9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Itpr2Q9Z329 2701 aa9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Klk12B2RVZ0 247 aa9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 2310009B15RikA0A0A6YWI4 143 aa9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Smim26Q3V460 107 aa9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Wfdc12Q9JHY3 85 aa9.45□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Tex15F8VPN2 2785 aa9.44□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Gm884A2A9H6 3643 aa9.44□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Gm37389A0A0A6YW05 95 aa9.44□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Igkv1-35A0A0G2JDE5 120 aa9.44□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Muc5acE9QAQ8 3455 aa9.44□□□□□ -0.9
Clcn3-204ENSMUST00000110301 MifP34884 115 aaKnown RBP9.44□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Igkv1-122A0A140T8M9 119 aa9.43□□□□□ -0.9
Clcn3-204ENSMUST00000110301 BC025920Q3US60 128 aa9.43□□□□□ -0.9
Clcn3-204ENSMUST00000110301 BC048502Q80Y74 154 aa9.43□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Lypd5Q9D7Z7 256 aa9.43□□□□□ -0.9
Clcn3-204ENSMUST00000110301 P06329 120 aa9.42□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Rpl18aP62717 176 aaKnown RBP9.42□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Plac8l1Q08EJ0 177 aa9.42□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Ly6hQ9WUC3 139 aa9.42□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Gm4707V9GXN5 68 aa9.42□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Gm10337F7DEP7 55 aa9.42□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Igkv6-13A0A0G2JGY3 119 aa9.41□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Gpha2Q925Q5 128 aa9.41□□□□□ -0.9
Clcn3-204ENSMUST00000110301 Csmd1Q923L3 3564 aa9.39□□□□□ -0.91
Clcn3-204ENSMUST00000110301 Gm17577J3QNF7 156 aa9.39□□□□□ -0.91
Clcn3-204ENSMUST00000110301 1700011M02RikB1AX35 88 aa9.38□□□□□ -0.91
Retrieved 100 of 22,080 RNA–protein pairs in 94.8 ms