RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Rhox8Q6VSS7 320 aa24.82■■□□□ 1.56
Clcn3-204ENSMUST00000110301 NischQ80TM9 1593 aa24.16■■□□□ 1.46
Clcn3-204ENSMUST00000110301 Abcc9P70170 1546 aa22.88■■□□□ 1.25
Clcn3-204ENSMUST00000110301 Ccdc136Q3TVA9 1136 aa22.65■■□□□ 1.22
Clcn3-204ENSMUST00000110301 Abcc8B2RUS7 1588 aa22.57■■□□□ 1.2
Clcn3-204ENSMUST00000110301 Gm35339A0A140LHH9 1649 aa22.27■■□□□ 1.16
Clcn3-204ENSMUST00000110301 Esf1Q3V1V3 845 aaKnown RBP21.97■■□□□ 1.11
Clcn3-204ENSMUST00000110301 Cngb1E1AZ71 1325 aa21.94■■□□□ 1.1
Clcn3-204ENSMUST00000110301 Trim41Q5NCC3 630 aa21.9■■□□□ 1.1
Clcn3-204ENSMUST00000110301 Ehmt2Q9Z148 1263 aaKnown RBP21.84■■□□□ 1.09
Clcn3-204ENSMUST00000110301 Zcchc6Q5BLK4 1491 aaKnown RBP21.64■■□□□ 1.05
Clcn3-204ENSMUST00000110301 Gab3Q8BSM5 595 aa21.63■■□□□ 1.05
Clcn3-204ENSMUST00000110301 Ccdc180J3QNE4 1664 aa21.26■□□□□ 0.99
Clcn3-204ENSMUST00000110301 Rtl1Q7M732 1744 aa21.2■□□□□ 0.98
Clcn3-204ENSMUST00000110301 Rb1cc1Q9ESK9 1588 aa21.15■□□□□ 0.98
Clcn3-204ENSMUST00000110301 Npm2Q80W85 207 aa21.15■□□□□ 0.98
Clcn3-204ENSMUST00000110301 Myt1lP97500 1187 aa21.12■□□□□ 0.97
Clcn3-204ENSMUST00000110301 HrcG5E8J6 738 aa21.09■□□□□ 0.97
Clcn3-204ENSMUST00000110301 Zeb1Q64318 1117 aa21.09■□□□□ 0.97
Clcn3-204ENSMUST00000110301 NacadQ5SWP3 1504 aa21.03■□□□□ 0.96
Clcn3-204ENSMUST00000110301 Il27Q8K3I6 234 aa20.99■□□□□ 0.95
Clcn3-204ENSMUST00000110301 Kdm5dQ62240 1548 aa20.9■□□□□ 0.94
Clcn3-204ENSMUST00000110301 Rpgrip1Q9EPQ2 1331 aa20.89■□□□□ 0.93
Clcn3-204ENSMUST00000110301 Baz1aO88379 1555 aa20.72■□□□□ 0.91
Clcn3-204ENSMUST00000110301 Dcaf1Q80TR8 1506 aa20.72■□□□□ 0.91
Clcn3-204ENSMUST00000110301 ScribQ80U72 1612 aa20.7■□□□□ 0.91
Clcn3-204ENSMUST00000110301 Brd4Q9ESU6 1400 aaKnown RBP20.59■□□□□ 0.89
Clcn3-204ENSMUST00000110301 UbtfP25976 765 aaKnown RBP20.57■□□□□ 0.88
Clcn3-204ENSMUST00000110301 Chic1Q8CBW7 227 aa20.54■□□□□ 0.88
Clcn3-204ENSMUST00000110301 Acin1Q9JIX8 1338 aaKnown RBP20.43■□□□□ 0.86
Clcn3-204ENSMUST00000110301 Ube2uB1AUC4 352 aa20.42■□□□□ 0.86
Clcn3-204ENSMUST00000110301 Ap3b1Q9Z1T1 1105 aa20.36■□□□□ 0.85
Clcn3-204ENSMUST00000110301 Sycp2Q9CUU3 1500 aa20.33■□□□□ 0.85
Clcn3-204ENSMUST00000110301 Npm1Q61937 292 aaKnown RBP20.31■□□□□ 0.84
Clcn3-204ENSMUST00000110301 Wdr66E9Q743 1299 aa20.28■□□□□ 0.84
Clcn3-204ENSMUST00000110301 Las1lA2BE28 776 aaKnown RBP20.23■□□□□ 0.83
Clcn3-204ENSMUST00000110301 Ubl4bQ9CQ84 188 aa20.17■□□□□ 0.82
Clcn3-204ENSMUST00000110301 Cep164Q5DU05 1446 aa20.16■□□□□ 0.82
Clcn3-204ENSMUST00000110301 Cecr2E9Q2Z1 1453 aa20.06■□□□□ 0.8
Clcn3-204ENSMUST00000110301 Golga3P55937 1487 aa20.05■□□□□ 0.8
Clcn3-204ENSMUST00000110301 Crybg2B7ZCC2 1516 aa20.01■□□□□ 0.79
Clcn3-204ENSMUST00000110301 Plekhg3Q4VAC9 1341 aa20.01■□□□□ 0.79
Clcn3-204ENSMUST00000110301 NefmP08553 848 aa20.01■□□□□ 0.79
Clcn3-204ENSMUST00000110301 Fam50aQ9WV03 339 aaKnown RBP19.95■□□□□ 0.78
Clcn3-204ENSMUST00000110301 Rsf1E9PWW9 1441 aaKnown RBP19.94■□□□□ 0.78
Clcn3-204ENSMUST00000110301 Lmod2Q3UHZ5 550 aa19.93■□□□□ 0.78
Clcn3-204ENSMUST00000110301 Smarca2Q6DIC0 1577 aa19.9■□□□□ 0.78
Clcn3-204ENSMUST00000110301 Mier1Q5UAK0 511 aa19.9■□□□□ 0.78
Clcn3-204ENSMUST00000110301 Kif15Q6P9L6 1387 aa19.87■□□□□ 0.77
Clcn3-204ENSMUST00000110301 Pds5bQ4VA53 1446 aaKnown RBP19.82■□□□□ 0.76
Clcn3-204ENSMUST00000110301 Ccdc88bQ4QRL3 1481 aa19.79■□□□□ 0.76
Clcn3-204ENSMUST00000110301 Ercc6F8VPZ5 1481 aa19.78■□□□□ 0.76
Clcn3-204ENSMUST00000110301 CftrP26361 1476 aa19.78■□□□□ 0.76
Clcn3-204ENSMUST00000110301 Clip1Q922J3 1391 aa19.75■□□□□ 0.75
Clcn3-204ENSMUST00000110301 Ppargc1bQ8VHJ7 1014 aa19.68■□□□□ 0.74
Clcn3-204ENSMUST00000110301 Synj1Q8CHC4 1574 aa19.68■□□□□ 0.74
Clcn3-204ENSMUST00000110301 Atad2bE9Q166 1460 aaKnown RBP19.59■□□□□ 0.73
Clcn3-204ENSMUST00000110301 Fkbp15Q6P9Q6 1216 aaKnown RBP19.56■□□□□ 0.72
Clcn3-204ENSMUST00000110301 Smarca4Q3TKT4 1613 aaKnown RBP19.54■□□□□ 0.72
Clcn3-204ENSMUST00000110301 Pcgf6Q99NA9 353 aa19.54■□□□□ 0.72
Clcn3-204ENSMUST00000110301 Neurod1Q60867 357 aa19.53■□□□□ 0.72
Clcn3-204ENSMUST00000110301 Ifnlr1Q8CGK5 535 aa19.53■□□□□ 0.72
Clcn3-204ENSMUST00000110301 Eid3Q3V124 375 aa19.49■□□□□ 0.71
Clcn3-204ENSMUST00000110301 Ccdc18Q640L5 1455 aa19.49■□□□□ 0.71
Clcn3-204ENSMUST00000110301 DiexfQ8BTT6 772 aaKnown RBP19.49■□□□□ 0.71
Clcn3-204ENSMUST00000110301 Supt5hO55201 1082 aaKnown RBP19.47■□□□□ 0.71
Clcn3-204ENSMUST00000110301 BicraF8VPZ9 1578 aa19.47■□□□□ 0.71
Clcn3-204ENSMUST00000110301 TonslQ6NZL6 1363 aa19.45■□□□□ 0.7
Clcn3-204ENSMUST00000110301 Zbtb7cQ8VCZ7 619 aa19.45■□□□□ 0.7
Clcn3-204ENSMUST00000110301 Setd5Q5XJV7 1441 aa19.45■□□□□ 0.7
Clcn3-204ENSMUST00000110301 Fmn1Q05860 1466 aa19.45■□□□□ 0.7
Clcn3-204ENSMUST00000110301 NclP09405 707 aaKnown RBP19.43■□□□□ 0.7
Clcn3-204ENSMUST00000110301 BlmO88700 1416 aa19.38■□□□□ 0.69
Clcn3-204ENSMUST00000110301 Iqgap2Q3UQ44 1575 aa19.36■□□□□ 0.69
Clcn3-204ENSMUST00000110301 Cttnbp2B9EJA2 1648 aa19.34■□□□□ 0.69
Clcn3-204ENSMUST00000110301 Cux2P70298 1426 aa19.32■□□□□ 0.68
Clcn3-204ENSMUST00000110301 Phldb1Q6PDH0 1371 aaKnown RBP19.32■□□□□ 0.68
Clcn3-204ENSMUST00000110301 Slc24a1Q91WD8 1130 aa19.3■□□□□ 0.68
Clcn3-204ENSMUST00000110301 Cep162Q6ZQ06 1403 aa19.29■□□□□ 0.68
Clcn3-204ENSMUST00000110301 Chic2Q9D9G3 165 aa19.27■□□□□ 0.68
Clcn3-204ENSMUST00000110301 Eea1Q8BL66 1411 aa19.24■□□□□ 0.67
Clcn3-204ENSMUST00000110301 Pelp1Q9DBD5 1123 aaKnown RBP19.22■□□□□ 0.67
Clcn3-204ENSMUST00000110301 Hnrnpul2Q00PI9 745 aaKnown RBP19.21■□□□□ 0.67
Clcn3-204ENSMUST00000110301 Amer1Q7TS75 1132 aa19.19■□□□□ 0.66
Clcn3-204ENSMUST00000110301 Arhgap27A2AB59 869 aa19.18■□□□□ 0.66
Clcn3-204ENSMUST00000110301 Rapgef2Q8CHG7 1496 aa19.16■□□□□ 0.66
Clcn3-204ENSMUST00000110301 Mapk8ip2Q9ERE9 830 aa19.12■□□□□ 0.65
Clcn3-204ENSMUST00000110301 Cdk11bP24788 784 aaKnown RBP19.09■□□□□ 0.65
Clcn3-204ENSMUST00000110301 Nop58Q6DFW4 536 aaKnown RBP19.06■□□□□ 0.64
Clcn3-204ENSMUST00000110301 Os9Q8K2C7 672 aa19.05■□□□□ 0.64
Clcn3-204ENSMUST00000110301 Sall2Q9QX96 1004 aa19.05■□□□□ 0.64
Clcn3-204ENSMUST00000110301 Baz1bQ9Z277 1479 aa19.04■□□□□ 0.64
Clcn3-204ENSMUST00000110301 LrpprcQ6PB66 1392 aaKnown RBP19.04■□□□□ 0.64
Clcn3-204ENSMUST00000110301 Frmpd1A2AKB4 1549 aa19.03■□□□□ 0.64
Clcn3-204ENSMUST00000110301 Zbtb4Q5F293 982 aa19■□□□□ 0.63
Clcn3-204ENSMUST00000110301 Cc2d2aQ8CFW7 1633 aa19■□□□□ 0.63
Clcn3-204ENSMUST00000110301 Dhx29Q6PGC1 1365 aaKnown RBP18.97■□□□□ 0.63
Clcn3-204ENSMUST00000110301 Aebp1Q640N1 1128 aa18.97■□□□□ 0.63
Clcn3-204ENSMUST00000110301 ClspnQ80YR7 1315 aa18.95■□□□□ 0.62
Clcn3-204ENSMUST00000110301 Erich6D3Z6S9 713 aa18.95■□□□□ 0.62
Retrieved 100 of 22,080 RNA–protein pairs in 83.7 ms