Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trav4-3A0A0B4J1K1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Trav4-3A0A0B4J1K1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav4-3A0A0B4J1K1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav4-3A0A0B4J1K1 Psd-208ENSMUST00000224556 2034 ntBASIC22.31■■□□□ 1.16
Trav4-3A0A0B4J1K1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav4-3A0A0B4J1K1 Gm25239-201ENSMUST00000174915 86 ntBASIC21.68■■□□□ 1.06
Trav4-3A0A0B4J1K1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav4-3A0A0B4J1K1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav4-3A0A0B4J1K1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav4-3A0A0B4J1K1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav4-3A0A0B4J1K1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav4-3A0A0B4J1K1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav4-3A0A0B4J1K1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav4-3A0A0B4J1K1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav4-3A0A0B4J1K1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav4-3A0A0B4J1K1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trav4-3A0A0B4J1K1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Trav4-3A0A0B4J1K1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.56■□□□□ 0.88
Trav4-3A0A0B4J1K1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav4-3A0A0B4J1K1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav4-3A0A0B4J1K1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav4-3A0A0B4J1K1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.26■□□□□ 0.83
Trav4-3A0A0B4J1K1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav4-3A0A0B4J1K1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav4-3A0A0B4J1K1 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.21■□□□□ 0.83
Trav4-3A0A0B4J1K1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav4-3A0A0B4J1K1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav4-3A0A0B4J1K1 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.03■□□□□ 0.8
Trav4-3A0A0B4J1K1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20■□□□□ 0.79
Trav4-3A0A0B4J1K1 Gm15042-201ENSMUST00000120212 883 ntBASIC19.96■□□□□ 0.79
Trav4-3A0A0B4J1K1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19.94■□□□□ 0.78
Trav4-3A0A0B4J1K1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav4-3A0A0B4J1K1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav4-3A0A0B4J1K1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav4-3A0A0B4J1K1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trav4-3A0A0B4J1K1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Trav4-3A0A0B4J1K1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav4-3A0A0B4J1K1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav4-3A0A0B4J1K1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19.86■□□□□ 0.77
Trav4-3A0A0B4J1K1 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
Trav4-3A0A0B4J1K1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav4-3A0A0B4J1K1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trav4-3A0A0B4J1K1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav4-3A0A0B4J1K1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav4-3A0A0B4J1K1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trav4-3A0A0B4J1K1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.67■□□□□ 0.74
Trav4-3A0A0B4J1K1 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav4-3A0A0B4J1K1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav4-3A0A0B4J1K1 Gm15045-201ENSMUST00000117359 883 ntBASIC19.63■□□□□ 0.73
Trav4-3A0A0B4J1K1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav4-3A0A0B4J1K1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav4-3A0A0B4J1K1 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav4-3A0A0B4J1K1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav4-3A0A0B4J1K1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Trav4-3A0A0B4J1K1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav4-3A0A0B4J1K1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav4-3A0A0B4J1K1 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav4-3A0A0B4J1K1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trav4-3A0A0B4J1K1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trav4-3A0A0B4J1K1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav4-3A0A0B4J1K1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav4-3A0A0B4J1K1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trav4-3A0A0B4J1K1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav4-3A0A0B4J1K1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav4-3A0A0B4J1K1 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trav4-3A0A0B4J1K1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.21■□□□□ 0.67
Trav4-3A0A0B4J1K1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav4-3A0A0B4J1K1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.18■□□□□ 0.66
Trav4-3A0A0B4J1K1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav4-3A0A0B4J1K1 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trav4-3A0A0B4J1K1 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav4-3A0A0B4J1K1 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav4-3A0A0B4J1K1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav4-3A0A0B4J1K1 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav4-3A0A0B4J1K1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav4-3A0A0B4J1K1 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav4-3A0A0B4J1K1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav4-3A0A0B4J1K1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav4-3A0A0B4J1K1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav4-3A0A0B4J1K1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav4-3A0A0B4J1K1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav4-3A0A0B4J1K1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav4-3A0A0B4J1K1 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trav4-3A0A0B4J1K1 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav4-3A0A0B4J1K1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav4-3A0A0B4J1K1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav4-3A0A0B4J1K1 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav4-3A0A0B4J1K1 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav4-3A0A0B4J1K1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav4-3A0A0B4J1K1 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav4-3A0A0B4J1K1 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trav4-3A0A0B4J1K1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.76■□□□□ 0.59
Trav4-3A0A0B4J1K1 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trav4-3A0A0B4J1K1 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav4-3A0A0B4J1K1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav4-3A0A0B4J1K1 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav4-3A0A0B4J1K1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Trav4-3A0A0B4J1K1 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav4-3A0A0B4J1K1 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms