Protein–RNA interactions for Protein: P61079

Ube2d3, Ubiquitin-conjugating enzyme E2 D3, mousemouse

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube2d3P61079 Gm25239-201ENSMUST00000174915 86 ntBASIC25.05■■□□□ 1.6
Ube2d3P61079 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ube2d3P61079 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ube2d3P61079 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
Ube2d3P61079 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ube2d3P61079 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Ube2d3P61079 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ube2d3P61079 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ube2d3P61079 Psd-208ENSMUST00000224556 2034 ntBASIC22.55■■□□□ 1.2
Ube2d3P61079 Gm15042-201ENSMUST00000120212 883 ntBASIC22.42■■□□□ 1.18
Ube2d3P61079 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ube2d3P61079 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ube2d3P61079 Gm15045-201ENSMUST00000117359 883 ntBASIC21.99■■□□□ 1.11
Ube2d3P61079 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube2d3P61079 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.86■■□□□ 1.09
Ube2d3P61079 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ube2d3P61079 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ube2d3P61079 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube2d3P61079 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ube2d3P61079 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ube2d3P61079 Gm24109-201ENSMUST00000175489 103 ntBASIC21.47■■□□□ 1.03
Ube2d3P61079 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ube2d3P61079 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ube2d3P61079 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ube2d3P61079 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ube2d3P61079 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.25■□□□□ 0.99
Ube2d3P61079 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ube2d3P61079 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ube2d3P61079 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ube2d3P61079 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ube2d3P61079 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ube2d3P61079 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Ube2d3P61079 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.08■□□□□ 0.97
Ube2d3P61079 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ube2d3P61079 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ube2d3P61079 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube2d3P61079 Gm23366-201ENSMUST00000175022 89 ntBASIC21.01■□□□□ 0.95
Ube2d3P61079 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ube2d3P61079 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ube2d3P61079 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ube2d3P61079 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ube2d3P61079 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ube2d3P61079 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ube2d3P61079 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ube2d3P61079 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.73■□□□□ 0.91
Ube2d3P61079 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ube2d3P61079 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.71■□□□□ 0.91
Ube2d3P61079 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.64■□□□□ 0.9
Ube2d3P61079 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ube2d3P61079 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Ube2d3P61079 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20.57■□□□□ 0.88
Ube2d3P61079 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube2d3P61079 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ube2d3P61079 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.52■□□□□ 0.88
Ube2d3P61079 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ube2d3P61079 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ube2d3P61079 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ube2d3P61079 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ube2d3P61079 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ube2d3P61079 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.19■□□□□ 0.82
Ube2d3P61079 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube2d3P61079 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube2d3P61079 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.13■□□□□ 0.81
Ube2d3P61079 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ube2d3P61079 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ube2d3P61079 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ube2d3P61079 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ube2d3P61079 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Ube2d3P61079 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Ube2d3P61079 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Ube2d3P61079 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
Ube2d3P61079 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ube2d3P61079 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Ube2d3P61079 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ube2d3P61079 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ube2d3P61079 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Ube2d3P61079 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19.8■□□□□ 0.76
Ube2d3P61079 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC19.8■□□□□ 0.76
Ube2d3P61079 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ube2d3P61079 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ube2d3P61079 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ube2d3P61079 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ube2d3P61079 Gm27325-201ENSMUST00000175467 74 ntBASIC19.73■□□□□ 0.75
Ube2d3P61079 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ube2d3P61079 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ube2d3P61079 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ube2d3P61079 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ube2d3P61079 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Ube2d3P61079 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube2d3P61079 Gm25238-201ENSMUST00000174914 89 ntBASIC19.59■□□□□ 0.73
Ube2d3P61079 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube2d3P61079 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ube2d3P61079 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC19.55■□□□□ 0.72
Ube2d3P61079 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ube2d3P61079 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ube2d3P61079 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ube2d3P61079 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Ube2d3P61079 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ube2d3P61079 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ube2d3P61079 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms