RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Gm9903Q8C9Y8 129 aa11.7□□□□□ -0.54
Ctcf-201ENSMUST00000005841 BaalcQ8VHV1 145 aa11.7□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Defa4P28311 92 aa11.7□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Tmem254aP0DN89 123 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Tmem254bP0DN90 123 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Tmem254cP0DN91 123 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Dnal4Q9DCM4 105 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Ighv10-3A0A075B5T6 119 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Rpl36aP83882 106 aaKnown RBP11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Fam229bQ8CF36 80 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Chchd7Q8K2Q5 85 aa11.69□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Defb29Q8BGW9 78 aa11.68□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Armcx4E9PWM3 2356 aa11.68□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Ighv1-59A0A0A6YXE0 117 aa11.68□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Gcn1E9PVA8 2671 aaKnown RBP11.67□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Igkv6-13A0A0G2JGY3 119 aa11.67□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Spg11Q3UHA3 2430 aa11.67□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Gm8439G3UWA7 96 aa11.67□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Defb26Q30KN7 186 aa11.67□□□□□ -0.54
Ctcf-201ENSMUST00000005841 P01819 144 aa11.66□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Fam19a5Q91WE9 132 aa11.66□□□□□ -0.54
Ctcf-201ENSMUST00000005841 Samd13D3YUG0 102 aa11.65□□□□□ -0.54
Ctcf-201ENSMUST00000005841 C530025M09RikF6RGA8 229 aa11.64□□□□□ -0.55
Ctcf-201ENSMUST00000005841 PspnO70300 156 aa11.64□□□□□ -0.55
Ctcf-201ENSMUST00000005841 D130052B06RikQ3UW13 202 aa11.64□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Chd6A3KFM7 2711 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Gm5153P01627 120 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 CrygeQ03740 174 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Pfn2Q9JJV2 140 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Notch3Q61982 2318 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Hbb-b2P02089 147 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Naa38Q9D2U5 125 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Crlf1Q9JM58 425 aa11.63□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Sec16aA2AIX1 2377 aa11.62□□□□□ -0.55
Ctcf-201ENSMUST00000005841 FlncQ8VHX6 2726 aaKnown RBP11.62□□□□□ -0.55
Ctcf-201ENSMUST00000005841 B230359F08RikA0A0B4J1K3 109 aa11.62□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Fam19a1Q7TPG8 133 aa11.62□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Smim26Q3V460 107 aa11.62□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Igkv1-110A0A0B4J1I0 119 aa11.61□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Psors1c2Q80ZC9 134 aa11.61□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Tmem243B2RVB9 118 aa11.61□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Tcl1b3P56842 122 aa11.61□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Ighv13-2A0A0A6YWN3 119 aa11.6□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Igkv8-27A0A0G2JF28 120 aa11.6□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Igkv8-30A0A140T8M3 121 aa11.6□□□□□ -0.55
Ctcf-201ENSMUST00000005841 PrlhG3UWC3 86 aa11.6□□□□□ -0.55
Ctcf-201ENSMUST00000005841 A730071L15RikQ8C4X0 137 aa11.6□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Pdzd2E9Q1M1 2796 aa11.6□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Igfn1Q3KNY0 2849 aa11.59□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Spink1P09036 80 aa11.59□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Ighv2-5A0A0A6YY69 116 aa11.59□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Odf3l2Q3TZ65 277 aa11.59□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Defa21Q8C1P2 93 aa11.59□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Rpl39lQ9CQD0 51 aa11.59□□□□□ -0.55
Ctcf-201ENSMUST00000005841 Trav13n-2A0A0G2JF93 110 aa11.58□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Prp2P05143 317 aa11.57□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Nf1Q04690 2841 aa11.57□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Trav13d-4A0A0G2JFX3 110 aa11.57□□□□□ -0.56
Ctcf-201ENSMUST00000005841 GhrhP16043 103 aa11.56□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Defa7P50705 93 aa11.56□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Nop10Q9CQS2 64 aa11.56□□□□□ -0.56
Ctcf-201ENSMUST00000005841 4930544G11RikQ9CR99 193 aa11.55□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Kmt2bO08550 2713 aa11.55□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Trav9d-3A0A075B695 113 aa11.55□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Igkv4-53A0A0G2JFC6 119 aa11.55□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Abca2P41234 2434 aa11.55□□□□□ -0.56
Ctcf-201ENSMUST00000005841 E130114P18RikF6S0S7 154 aa11.54□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Igkv8-18A0A0B4J1J3 123 aa11.54□□□□□ -0.56
Ctcf-201ENSMUST00000005841 EnhoQ8K1D8 76 aa11.54□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Kmt2aP55200 3966 aa11.53□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Spink4O35679 86 aa11.53□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Gm10770F7D043 238 aa11.53□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Trav13-1A0A075B644 110 aa11.52□□□□□ -0.56
Ctcf-201ENSMUST00000005841 Pkd1l2Q7TN88 2461 aa11.52□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Inafm2A0A1L1STD6 152 aa11.52□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Gm7849D3YX03 116 aa11.52□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Ormdl1Q921I0 153 aa11.51□□□□□ -0.57
Ctcf-201ENSMUST00000005841 4930535I16RikQ9CUI2 172 aa11.51□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Gm7102J3QQ10 178 aa11.51□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Rnase1P00683 149 aa11.5□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Ncor2Q9WU42 2472 aaKnown RBP11.5□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Cox7a1P56392 80 aa11.49□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Lrrk2Q5S006 2527 aa11.49□□□□□ -0.57
Ctcf-201ENSMUST00000005841 A830005F24RikQ8BRT5 167 aa11.46□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Cep192E9Q4Y4 2514 aaKnown RBP11.46□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Igkv8-26A0A075B5N5 123 aa11.46□□□□□ -0.57
Ctcf-201ENSMUST00000005841 Serp1Q9Z1W5 66 aa11.46□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Trav9n-4A0A075B631 113 aa11.45□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Igkv4-61A0A0G2JH00 117 aa11.45□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Ighv1-49A0A0A6YWX2 117 aa11.45□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Cox7bP56393 80 aa11.44□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Ighv2-2A0A075B5P8 116 aa11.44□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Gm17689B3GLJ4 109 aa11.44□□□□□ -0.58
Ctcf-201ENSMUST00000005841 P01821 116 aa11.44□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Ndufc1Q9CQY9 76 aa11.44□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Pla2g1bQ9Z0Y2 146 aa11.43□□□□□ -0.58
Ctcf-201ENSMUST00000005841 4930556J24RikQ9D4U7 146 aa11.43□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Dnah3Q8BW94 4083 aa11.43□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Igkv2-109A0A075B5K6 120 aa11.43□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Fam19a3Q7TPG6 132 aa11.42□□□□□ -0.58
Retrieved 100 of 22,080 RNA–protein pairs in 49.5 ms