RNA–Protein interactions for RNA: YJL041W

NSP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NSP1, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSP1	YJL041W	ICL1	P28240	557 aa	Predicted RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	EUG1	P32474	517 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	3.57	□□□□□ -1.84	not detected
NSP1	YJL041W	MRP4	P32902	394 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	ATO2	P32907	282 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	VPS21	P36017	210 aa	Known RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	TYS1	P36421	394 aa	Known RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	HSE1	P38753	452 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	MTG2	P38860	518 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	RPH1	P39956	796 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	THO1	P40040	218 aa	Known RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	JEM1	P40358	645 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	UFE1	P41834	346 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	ZIM17	P42844	174 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	CCC1	P47818	322 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	NCS6	P53088	359 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	ERP6	P53198	216 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	YNR040W	P53736	256 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	HDA1	P53973	706 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	RPL22B	P56628	122 aa	Known RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	RPN4	Q03465	531 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	NSE1	Q07913	336 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	RPN8	Q08723	338 aa	Known RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	YPR063C	Q12160	140 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	RRP36	Q12481	300 aa	Predicted RBP	3.57	□□□□□ -1.84
NSP1	YJL041W	CMC2	Q3E7A4	109 aa		3.57	□□□□□ -1.84
NSP1	YJL041W	PET54	P10834	293 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	NPR1	P22211	790 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	AAD3	P25612	363 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	MRS6	P32864	603 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	YKL050C	P35736	922 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	KES1	P35844	434 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	YMR262W	P38430	313 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	GOS1	P38736	223 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	MIC19	P43594	170 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	LIA1	P47120	325 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	FMS1	P50264	508 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	PIP2	P52960	996 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	GUP1	P53154	560 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	GOR1	P53839	350 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	VPS64	Q03944	604 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	TSR2	Q06672	205 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	TRE1	Q08919	783 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	DDC1	Q08949	612 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	AIM41	Q12032	185 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YOR214C	Q12282	236 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YDR061W	Q12298	539 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	LDB17	Q12342	491 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	NCA2	Q12374	616 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	DPH6	Q12429	685 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YDR461C-A	Q2V2P7	80 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YHR213W-A	Q8TGT4	77 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	MLP1	Q02455	1875 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	GAL1	P04385	528 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	MSD1	P15179	658 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	PRP4	P20053	465 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	DAL7	P21826	554 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	PEP3	P27801	918 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	SRB4	P32569	687 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YKL133C	P36066	463 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	IMD2	P38697	523 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	PEX28	P38848	579 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YAP1801	P38856	637 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	SWP82	P43554	623 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	FMP32	P43557	207 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	FYV8	P46949	817 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	YJL181W	P46987	611 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	BNA3	P47039	444 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	BRO1	P48582	844 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	RFX1	P48743	811 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	MND1	P53102	219 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	YGR053C	P53234	283 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	ORC3	P54790	616 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	FDC1	Q03034	503 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	ATG16	Q03818	150 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	SHE9	Q04172	456 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	NSE3	Q05541	303 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	SMD2	Q06217	110 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	TOS4	Q06266	489 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	VPS74	Q06385	345 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	MLC2	Q06580	163 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	RCL1	Q08096	367 aa	Predicted RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	NEW1	Q08972	1196 aa	Known RBP	3.56	□□□□□ -1.84
NSP1	YJL041W	HUA2	Q12134	243 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	GLO4	Q12320	285 aa		3.56	□□□□□ -1.84
NSP1	YJL041W	TUF1	P02992	437 aa	Known RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	IDI1	P15496	288 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	RVS161	P25343	265 aa	Known RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	GFD2	P25370	566 aa	Known RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	GSY2	P27472	705 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	URA1	P28272	314 aa	Predicted RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	SAC6	P32599	642 aa	Known RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	BUD2	P33314	1104 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	PRX1	P34227	261 aa	Known RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	DID4	P36108	232 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	YBL028C	P38202	106 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	APE4	P38821	490 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	SEC28	P40509	296 aa	Known RBP	3.55	□□□□□ -1.84
NSP1	YJL041W	TED1	P40533	473 aa		3.55	□□□□□ -1.84
NSP1	YJL041W	INP51	P40559	946 aa	Known RBP	3.55	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 54.6 ms