RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W COS111P38308 924 aa2.23□□□□□ -2.05
SIR4YDR227W AIM46P38885 310 aa2.23□□□□□ -2.05
SIR4YDR227W ENP2P48234 707 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W NIT3P49954 291 aa2.23□□□□□ -2.05
SIR4YDR227W GPG1P53130 126 aa2.23□□□□□ -2.05
SIR4YDR227W YNR068CP53754 272 aa2.23□□□□□ -2.05
SIR4YDR227W CUS1Q02554 436 aaPredicted RBP2.23□□□□□ -2.05
SIR4YDR227W AGE1Q04412 482 aa2.23□□□□□ -2.05
SIR4YDR227W DPB4Q04603 196 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W TFC6Q06339 672 aa2.23□□□□□ -2.05
SIR4YDR227W PGC1Q08959 321 aa2.23□□□□□ -2.05
SIR4YDR227W TMA46Q12000 345 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W YTM1Q12024 460 aaPredicted RBP2.23□□□□□ -2.05
SIR4YDR227W RKM4Q12504 494 aa2.23□□□□□ -2.05
SIR4YDR227W ADE8P04161 214 aa2.23□□□□□ -2.05
SIR4YDR227W PMA1P05030 918 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W KIP1P28742 1111 aa2.23□□□□□ -2.05
SIR4YDR227W GCS1P35197 352 aa2.23□□□□□ -2.05
SIR4YDR227W LAM1P38851 1228 aa2.23□□□□□ -2.05
SIR4YDR227W MPP6P53725 186 aaPredicted RBP2.23□□□□□ -2.05
SIR4YDR227W YPL107WQ02873 248 aa2.23□□□□□ -2.05
SIR4YDR227W GGA1Q06336 557 aa2.23□□□□□ -2.05
SIR4YDR227W GPM3Q12326 303 aa2.23□□□□□ -2.05
SIR4YDR227W LSO1Q3E827 93 aa2.23□□□□□ -2.05
SIR4YDR227W SUI3P09064 285 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W RPL43AP0CX25 92 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W RPL43BP0CX26 92 aa2.23□□□□□ -2.05
SIR4YDR227W GFA1P14742 717 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W APN1P22936 367 aa2.23□□□□□ -2.05
SIR4YDR227W YKL077WP36081 392 aa2.23□□□□□ -2.05
SIR4YDR227W POL12P38121 705 aaPredicted RBP2.23□□□□□ -2.05
SIR4YDR227W PSD1P39006 500 aa2.23□□□□□ -2.05
SIR4YDR227W PAC1P39946 494 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W ACA1P39970 489 aa2.23□□□□□ -2.05
SIR4YDR227W YRB1P41920 201 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W YNR065CP53751 1116 aa2.23□□□□□ -2.05
SIR4YDR227W ORC4P54791 529 aa2.23□□□□□ -2.05
SIR4YDR227W CDC55Q00362 526 aa2.23□□□□□ -2.05
SIR4YDR227W UGO1Q03327 502 aa2.23□□□□□ -2.05
SIR4YDR227W OPT2Q06593 877 aa2.23□□□□□ -2.05
SIR4YDR227W GUP2Q08929 609 aa2.23□□□□□ -2.05
SIR4YDR227W YRA1Q12159 226 aaKnown RBP2.23□□□□□ -2.05
SIR4YDR227W UNG1P12887 359 aa2.22□□□□□ -2.05
SIR4YDR227W YCL042WP25572 119 aa2.22□□□□□ -2.05
SIR4YDR227W NTG1P31378 399 aa2.22□□□□□ -2.05
SIR4YDR227W MAL33P38157 468 aa2.22□□□□□ -2.05
SIR4YDR227W NCL1P38205 684 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W CST26P38226 397 aa2.22□□□□□ -2.05
SIR4YDR227W CKB2P38930 258 aa2.22□□□□□ -2.05
SIR4YDR227W BUD27P43573 796 aaKnown RBP RIP-Chip data2.22□□□□□ -2.05not detected
SIR4YDR227W MNT2P53059 558 aa2.22□□□□□ -2.05
SIR4YDR227W SNO4Q04902 237 aa2.22□□□□□ -2.05
SIR4YDR227W CDA1Q06702 301 aa2.22□□□□□ -2.05
SIR4YDR227W HSP33Q08914 237 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W HSP32Q08992 237 aa2.22□□□□□ -2.05
SIR4YDR227W RIM20Q12033 661 aa2.22□□□□□ -2.05
SIR4YDR227W YPR015CQ12531 247 aa2.22□□□□□ -2.05
SIR4YDR227W TUF1P02992 437 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W NGG1P32494 702 aa2.22□□□□□ -2.05
SIR4YDR227W DOA4P32571 926 aa2.22□□□□□ -2.05
SIR4YDR227W SUV3P32580 737 aa2.22□□□□□ -2.05
SIR4YDR227W SFA1P32771 386 aa2.22□□□□□ -2.05
SIR4YDR227W DEF1P35732 738 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W PZF1P39933 429 aa2.22□□□□□ -2.05
SIR4YDR227W LYS5P50113 272 aa2.22□□□□□ -2.05
SIR4YDR227W CSI1Q04368 295 aa2.22□□□□□ -2.05
SIR4YDR227W LCB5Q06147 687 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W YDR018CQ12185 396 aa2.22□□□□□ -2.05
SIR4YDR227W KSS1P14681 368 aa2.22□□□□□ -2.05
SIR4YDR227W CBP3P21560 335 aa2.22□□□□□ -2.05
SIR4YDR227W POT1P27796 417 aaKnown RBP RIP-Chip data2.22□□□□□ -2.05not detected
SIR4YDR227W DUR3P33413 735 aa2.22□□□□□ -2.05
SIR4YDR227W WBP1P33767 430 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W YBL055CP34220 418 aaPredicted RBP2.22□□□□□ -2.05
SIR4YDR227W YKL151CP36059 337 aa2.22□□□□□ -2.05
SIR4YDR227W AXL2P38928 823 aa2.22□□□□□ -2.05
SIR4YDR227W CPR6P53691 371 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W SNZ1Q03148 297 aa2.22□□□□□ -2.05
SIR4YDR227W HPF1Q05164 967 aa2.22□□□□□ -2.05
SIR4YDR227W STP3Q05937 343 aa2.22□□□□□ -2.05
SIR4YDR227W EST2Q06163 884 aa2.22□□□□□ -2.05
SIR4YDR227W MLH2Q07980 695 aa2.22□□□□□ -2.05
SIR4YDR227W TCO89Q08921 799 aa2.22□□□□□ -2.05
SIR4YDR227W KEL3Q08979 651 aaPredicted RBP2.22□□□□□ -2.05
SIR4YDR227W RRP6Q12149 733 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W YPL066WQ12194 479 aa2.22□□□□□ -2.05
SIR4YDR227W PHO5P00635 467 aa2.22□□□□□ -2.05
SIR4YDR227W HXK1P04806 485 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W RPS3P05750 240 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W VPS1P21576 704 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W MSN4P33749 630 aa2.22□□□□□ -2.05
SIR4YDR227W SDS22P36047 338 aa2.22□□□□□ -2.05
SIR4YDR227W MTC3P53077 123 aa2.22□□□□□ -2.05
SIR4YDR227W EOS1P53938 366 aa2.22□□□□□ -2.05
SIR4YDR227W CSR1Q06705 408 aaKnown RBP2.22□□□□□ -2.05
SIR4YDR227W LCB4Q12246 624 aa2.22□□□□□ -2.05
SIR4YDR227W RPS7AP26786 190 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W CTM1P38818 585 aa2.21□□□□□ -2.06
SIR4YDR227W ARB1P40024 610 aaKnown RBP2.21□□□□□ -2.06
SIR4YDR227W RAD26P40352 1085 aa2.21□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms