RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	RPO41	P13433	1351 aa	Known RBP	4.63	□□□□□ -1.67
HSP42	YDR171W	PET111	P08468	800 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	GMH1	P36125	273 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	APL3	P38065	1025 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	TDP1	P38319	544 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	PPE1	P38796	400 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	VPS73	P53142	486 aa	Known RBP	4.62	□□□□□ -1.67
HSP42	YDR171W	YGR054W	P53235	642 aa	Known RBP	4.62	□□□□□ -1.67
HSP42	YDR171W	HOL1	P53389	586 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	SPC98	P53540	846 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	HIM1	Q06674	414 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	SLX4	Q12098	748 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	YOL087C	Q99247	1116 aa		4.62	□□□□□ -1.67
HSP42	YDR171W	URB1	P34241	1764 aa	Known RBP	4.62	□□□□□ -1.67
HSP42	YDR171W	RPS19A	P07280	144 aa	Known RBP	4.61	□□□□□ -1.67
HSP42	YDR171W	RPS19B	P07281	144 aa	Predicted RBP	4.61	□□□□□ -1.67
HSP42	YDR171W	MAM1	P40065	302 aa		4.61	□□□□□ -1.67
HSP42	YDR171W	PEF1	P53238	335 aa		4.61	□□□□□ -1.67
HSP42	YDR171W	SNF12	P53628	566 aa		4.61	□□□□□ -1.67
HSP42	YDR171W	HLR1	Q04429	423 aa		4.61	□□□□□ -1.67
HSP42	YDR171W	UFO1	Q04511	668 aa		4.61	□□□□□ -1.67
HSP42	YDR171W	SML1	Q04964	104 aa		4.61	□□□□□ -1.67
HSP42	YDR171W	RTK1	Q12100	620 aa	Predicted RBP	4.61	□□□□□ -1.67
HSP42	YDR171W	TMA7	Q3E764	64 aa	Known RBP	4.61	□□□□□ -1.67
HSP42	YDR171W	VAS1	P07806	1104 aa	Known RBP	4.6	□□□□□ -1.67
HSP42	YDR171W	SRP54	P20424	541 aa	Known RBP	4.6	□□□□□ -1.67
HSP42	YDR171W	DMC1	P25453	334 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	MSH1	P25846	959 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	MFT1	P33441	392 aa	Known RBP	4.6	□□□□□ -1.67
HSP42	YDR171W	MRPL7	P36519	292 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	NPR3	P38742	1146 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	RTT107	P38850	1070 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	STL1	P39932	569 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	PMT6	P42934	759 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	MNT2	P53059	558 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	MDR1	P53258	950 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	YNL050C	P53952	270 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	PRP3	Q03338	469 aa	Predicted RBP	4.6	□□□□□ -1.67
HSP42	YDR171W	TRS23	Q03784	219 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	CSI1	Q04368	295 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	NUR1	Q12066	484 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
HSP42	YDR171W	SUT2	Q12286	268 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	VPS5	Q92331	675 aa		4.6	□□□□□ -1.67
HSP42	YDR171W	LEU2	P04173	364 aa	Predicted RBP	4.59	□□□□□ -1.67
HSP42	YDR171W	SES1	P07284	462 aa	Known RBP	4.59	□□□□□ -1.67
HSP42	YDR171W	GFA1	P14742	717 aa	Known RBP	4.59	□□□□□ -1.67
HSP42	YDR171W	KCC4	P25389	1037 aa		4.59	□□□□□ -1.67
HSP42	YDR171W	BYE1	P36106	594 aa		4.59	□□□□□ -1.67
HSP42	YDR171W	YEL025C	P39991	1188 aa		4.59	□□□□□ -1.67
HSP42	YDR171W	YRF1-2	P40105	1681 aa		4.59	□□□□□ -1.67
HSP42	YDR171W	QRI1	P43123	477 aa	Known RBP	4.59	□□□□□ -1.67
HSP42	YDR171W	BMS1	Q08965	1183 aa	Known RBP	4.59	□□□□□ -1.67
HSP42	YDR171W	RPL19A	P0CX82	189 aa	Known RBP	4.58	□□□□□ -1.68
HSP42	YDR171W	RPL19B	P0CX83	189 aa	Predicted RBP	4.58	□□□□□ -1.68
HSP42	YDR171W	PCK1	P10963	549 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	TPM1	P17536	199 aa	Known RBP	4.58	□□□□□ -1.68
HSP42	YDR171W	ARG1	P22768	420 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	PHO3	P24031	467 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	GCD7	P32502	381 aa	Predicted RBP	4.58	□□□□□ -1.68
HSP42	YDR171W	SWI3	P32591	825 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	EMP70	P32802	667 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	NIC96	P34077	839 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	VPS41	P38959	992 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	TAH11	P47112	604 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	DSD1	P53095	428 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	MFM1	Q02783	413 aa		4.58	□□□□□ -1.68
HSP42	YDR171W	EFR3	Q03653	782 aa	Known RBP	4.58	□□□□□ -1.68
HSP42	YDR171W	RRP5	Q05022	1729 aa	Known RBP	4.58	□□□□□ -1.68
HSP42	YDR171W	URA3	P03962	267 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	STE12	P13574	688 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	CWH43	P25618	953 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	MIT1	P40002	666 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	LRO1	P40345	661 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	MAD2	P40958	196 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	TFG2	P41896	400 aa	Predicted RBP	4.57	□□□□□ -1.68
HSP42	YDR171W	YJR008W	P47085	338 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	YIP4	P53093	235 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	YNR071C	P53757	342 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	YMR102C	Q03177	834 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	COG4	Q06096	861 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	YOL057W	Q08225	711 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	PSF3	Q12146	194 aa		4.57	□□□□□ -1.68
HSP42	YDR171W	MDM20	Q12387	796 aa	Known RBP	4.57	□□□□□ -1.68
HSP42	YDR171W	DDP1	Q99321	188 aa	Known RBP	4.57	□□□□□ -1.68
HSP42	YDR171W	PHO5	P00635	467 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	HSP82	P02829	709 aa	Known RBP	4.56	□□□□□ -1.68
HSP42	YDR171W	STE4	P18851	423 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	HSP104	P31539	908 aa	Known RBP	4.56	□□□□□ -1.68
HSP42	YDR171W	PRX1	P34227	261 aa	Known RBP	4.56	□□□□□ -1.68
HSP42	YDR171W	RRP1	P35178	278 aa	Predicted RBP	4.56	□□□□□ -1.68
HSP42	YDR171W	YMC2	P38087	329 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	SCS2	P40075	244 aa	Known RBP	4.56	□□□□□ -1.68
HSP42	YDR171W	NGL2	Q03264	515 aa	Known RBP	4.56	□□□□□ -1.68
HSP42	YDR171W	VPS72	Q03388	795 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	YDR179W-A	Q03983	463 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	ARR3	Q06598	404 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	DIN7	Q12086	430 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	HOS1	Q12214	470 aa		4.56	□□□□□ -1.68
HSP42	YDR171W	YKL068W-A	Q3E826	78 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 24.3 ms