RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Zfp119aQ9JIC0 545 aa12.51□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Trdv1A0A075B657 112 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Trav19A0A0B4J1K4 119 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm12169F2Z474 250 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Spata46Q4FZF2 204 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Cd33Q63994 403 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Znrf2Q71FD5 238 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Olfr1323Q8VF35 309 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Olfr748E9Q9Z0 307 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Ear14F6YUX7 155 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm2174F6ZVF2 133 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Ccl12Q62401 104 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 A730015C16RikQ8C992 119 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Tmem141A2AJB2 108 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Lypd1Q8BLC3 141 aa12.5□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 AgrnA2ASQ1 1950 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm10803Q3TZS6 135 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Trav8-1A0A075B641 109 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Trav14n-3A0A075B645 120 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Cks1bP61025 79 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Fer1l4A3KGK3 1992 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Wdr90Q6ZPG2 1874 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Foxf1Q61080 378 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 COA4Q8BT51 87 aa12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Iba57Q8CAK1 358 aaKnown RBP12.49□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Ighv1-22A0A075B5U7 117 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm16686Q3UMN9 131 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Spsb3Q571F5 354 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Igfbpl1Q80W15 270 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Med13lQ6JPI3 2207 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Trav9d-1A0A075B699 112 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm11444F6QMA6 170 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Myod1P10085 318 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Fam110aQ8R184 296 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 P03980 138 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Defa2P28309 93 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Saa4P31532 130 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Mrpl36Q99N90 102 aa12.48□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Ighv1-69A0A0G2JFS5 117 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 P01792 123 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Olfr477Q8VGI6 310 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gtsf1lQ9CWD0 151 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Plekhb2Q9QZC7 221 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Pygo1Q9D0P5 417 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 OtorQ9JIE3 128 aa12.47□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm35549A0A0N4SUS7 141 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Thy1P01831 162 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Defa20Q45VN2 95 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Cmc4Q61908 68 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm29289A0A087WPY7 166 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm4064A0A087WR82 380 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 H2al1jA2BFR3 109 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm10352B2RWR6 380 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm21693J3QK27 380 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Rbmy1a1O35698 380 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Mrpl32Q9DCI9 187 aaKnown RBP12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Piezo1E2JF22 2547 aa12.46□□□□□ -0.41
Ccdc88b-201ENSMUST00000113440 Gm5129F6YHA9 99 aa12.46□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm28269A0A087WSG3 125 aa12.46□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Il1f10Q8R459 152 aa12.46□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Phpt1Q9DAK9 124 aa12.46□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Ighv1-19A0A0A6YWX0 117 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 MycbQ6P8Z1 170 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 CntfrO88507 372 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 P01726 129 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Rchy1Q9CR50 261 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm20379A0A087WR34 119 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm6871L7N248 545 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm21370Q3T9V6 190 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm904Q3V2L5 102 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Heatr5aQ5PRF0 2038 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Hbb-bsA8DUK4 147 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Hbb-b1P02088 147 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Q08AU9 97 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Cdk2ap2Q9CPY4 127 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 SelenokQ9JLJ1 94 aa12.45□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Tnrc6aQ3UHK8 1896 aaKnown RBP12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Tmem238A9JSM3 176 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 A230072I06RikQ3UUJ8 172 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 PdpnQ62011 172 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Slc25a29Q8BL03 306 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Tomm40Q9QYA2 361 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 ArtnQ9Z0L2 224 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm28778A0A087WSK7 233 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Igkv14-130A0A0G2JF45 117 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 TtrP07309 147 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Q4KKZ1 196 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Olfr1373Q7TQT6 311 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Dmrt3Q80WT2 476 aa12.44□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Trav7-1A0A0G2JEV5 112 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Tmem8bB1AWJ5 472 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Atp6v0e1Q9CQD8 81 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Mllt11P97783 90 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Il22ra2Q80XF5 230 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gpr82Q8BZR0 328 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Tdgf1P51865 171 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 4930596D02RikQ3V0H9 216 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Olfr211Q8VGH2 309 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Pcsk5Q04592 1877 aa12.43□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Ighv8-6A0A0A6YXA3 118 aa12.42□□□□□ -0.42
Retrieved 100 of 22,080 RNA–protein pairs in 48.2 ms