Protein–RNA interactions for Protein: A0A075B641

Trav8-1, T cell receptor alpha variable 8-1 (Fragment), mousemouse

Predictions only

Length 109 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8-1A0A075B641 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24,23■■□□□ 1,47
Trav8-1A0A075B641 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23,41■■□□□ 1,34
Trav8-1A0A075B641 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23,3■■□□□ 1,32
Trav8-1A0A075B641 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23,15■■□□□ 1,3
Trav8-1A0A075B641 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22,89■■□□□ 1,26
Trav8-1A0A075B641 Psd-208ENSMUST00000224556 2034 ntBASIC22,86■■□□□ 1,25
Trav8-1A0A075B641 Gm25239-201ENSMUST00000174915 86 ntBASIC22,85■■□□□ 1,25
Trav8-1A0A075B641 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21,91■■□□□ 1,1
Trav8-1A0A075B641 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21,89■■□□□ 1,1
Trav8-1A0A075B641 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21,74■■□□□ 1,07
Trav8-1A0A075B641 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21,69■■□□□ 1,06
Trav8-1A0A075B641 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21,66■■□□□ 1,06
Trav8-1A0A075B641 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21,65■■□□□ 1,06
Trav8-1A0A075B641 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21,63■■□□□ 1,05
Trav8-1A0A075B641 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21,48■■□□□ 1,03
Trav8-1A0A075B641 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21,41■■□□□ 1,02
Trav8-1A0A075B641 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21,38■■□□□ 1,01
Trav8-1A0A075B641 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21,37■■□□□ 1,01
Trav8-1A0A075B641 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21,31■■□□□ 1
Trav8-1A0A075B641 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21,11■□□□□ 0,97
Trav8-1A0A075B641 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21,09■□□□□ 0,97
Trav8-1A0A075B641 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21,01■□□□□ 0,95
Trav8-1A0A075B641 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0,95
Trav8-1A0A075B641 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20,92■□□□□ 0,94
Trav8-1A0A075B641 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20,9■□□□□ 0,94
Trav8-1A0A075B641 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20,84■□□□□ 0,93
Trav8-1A0A075B641 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20,83■□□□□ 0,93
Trav8-1A0A075B641 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20,81■□□□□ 0,92
Trav8-1A0A075B641 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20,8■□□□□ 0,92
Trav8-1A0A075B641 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20,79■□□□□ 0,92
Trav8-1A0A075B641 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Trav8-1A0A075B641 Gm42596-201ENSMUST00000196305 1958 ntBASIC20,72■□□□□ 0,91
Trav8-1A0A075B641 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20,69■□□□□ 0,9
Trav8-1A0A075B641 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20,69■□□□□ 0,9
Trav8-1A0A075B641 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20,67■□□□□ 0,9
Trav8-1A0A075B641 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20,64■□□□□ 0,89
Trav8-1A0A075B641 Gm15042-201ENSMUST00000120212 883 ntBASIC20,6■□□□□ 0,89
Trav8-1A0A075B641 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20,55■□□□□ 0,88
Trav8-1A0A075B641 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20,53■□□□□ 0,88
Trav8-1A0A075B641 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20,33■□□□□ 0,84
Trav8-1A0A075B641 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20,33■□□□□ 0,84
Trav8-1A0A075B641 Gm10524-201ENSMUST00000181931 1893 ntBASIC20,33■□□□□ 0,84
Trav8-1A0A075B641 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20,31■□□□□ 0,84
Trav8-1A0A075B641 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20,29■□□□□ 0,84
Trav8-1A0A075B641 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20,28■□□□□ 0,84
Trav8-1A0A075B641 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20,24■□□□□ 0,83
Trav8-1A0A075B641 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20,21■□□□□ 0,83
Trav8-1A0A075B641 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20,2■□□□□ 0,82
Trav8-1A0A075B641 Gm15045-201ENSMUST00000117359 883 ntBASIC20,2■□□□□ 0,82
Trav8-1A0A075B641 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20,2■□□□□ 0,82
Trav8-1A0A075B641 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20,13■□□□□ 0,81
Trav8-1A0A075B641 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20,13■□□□□ 0,81
Trav8-1A0A075B641 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20,1■□□□□ 0,81
Trav8-1A0A075B641 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20,07■□□□□ 0,8
Trav8-1A0A075B641 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20,05■□□□□ 0,8
Trav8-1A0A075B641 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20,04■□□□□ 0,8
Trav8-1A0A075B641 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19,93■□□□□ 0,78
Trav8-1A0A075B641 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19,91■□□□□ 0,78
Trav8-1A0A075B641 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19,91■□□□□ 0,78
Trav8-1A0A075B641 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19,88■□□□□ 0,77
Trav8-1A0A075B641 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19,88■□□□□ 0,77
Trav8-1A0A075B641 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC19,86■□□□□ 0,77
Trav8-1A0A075B641 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19,85■□□□□ 0,77
Trav8-1A0A075B641 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19,85■□□□□ 0,77
Trav8-1A0A075B641 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19,83■□□□□ 0,76
Trav8-1A0A075B641 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19,81■□□□□ 0,76
Trav8-1A0A075B641 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19,8■□□□□ 0,76
Trav8-1A0A075B641 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19,78■□□□□ 0,76
Trav8-1A0A075B641 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19,78■□□□□ 0,76
Trav8-1A0A075B641 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19,77■□□□□ 0,76
Trav8-1A0A075B641 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19,77■□□□□ 0,76
Trav8-1A0A075B641 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19,75■□□□□ 0,75
Trav8-1A0A075B641 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19,74■□□□□ 0,75
Trav8-1A0A075B641 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19,72■□□□□ 0,75
Trav8-1A0A075B641 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19,71■□□□□ 0,75
Trav8-1A0A075B641 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19,68■□□□□ 0,74
Trav8-1A0A075B641 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19,68■□□□□ 0,74
Trav8-1A0A075B641 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19,65■□□□□ 0,74
Trav8-1A0A075B641 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC19,63■□□□□ 0,73
Trav8-1A0A075B641 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19,63■□□□□ 0,73
Trav8-1A0A075B641 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19,61■□□□□ 0,73
Trav8-1A0A075B641 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19,57■□□□□ 0,72
Trav8-1A0A075B641 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19,57■□□□□ 0,72
Trav8-1A0A075B641 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19,56■□□□□ 0,72
Trav8-1A0A075B641 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19,55■□□□□ 0,72
Trav8-1A0A075B641 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19,54■□□□□ 0,72
Trav8-1A0A075B641 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19,54■□□□□ 0,72
Trav8-1A0A075B641 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19,51■□□□□ 0,71
Trav8-1A0A075B641 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19,51■□□□□ 0,71
Trav8-1A0A075B641 Gm24109-201ENSMUST00000175489 103 ntBASIC19,49■□□□□ 0,71
Trav8-1A0A075B641 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19,48■□□□□ 0,71
Trav8-1A0A075B641 Zxda-201ENSMUST00000117281 2621 ntBASIC19,47■□□□□ 0,71
Trav8-1A0A075B641 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19,44■□□□□ 0,7
Trav8-1A0A075B641 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19,43■□□□□ 0,7
Trav8-1A0A075B641 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC19,37■□□□□ 0,69
Trav8-1A0A075B641 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19,35■□□□□ 0,69
Trav8-1A0A075B641 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC19,34■□□□□ 0,69
Trav8-1A0A075B641 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC19,33■□□□□ 0,69
Trav8-1A0A075B641 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19,32■□□□□ 0,68
Trav8-1A0A075B641 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19,31■□□□□ 0,68
Retrieved 100 of 76,532 protein–RNA pairs in 10,6 ms