Protein–RNA interactions for Protein: A0A075B641

Trav8-1, T cell receptor alpha variable 8-1 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8-1A0A075B641 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trav8-1A0A075B641 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trav8-1A0A075B641 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Trav8-1A0A075B641 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav8-1A0A075B641 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trav8-1A0A075B641 Psd-208ENSMUST00000224556 2034 ntBASIC22.86■■□□□ 1.25
Trav8-1A0A075B641 Gm25239-201ENSMUST00000174915 86 ntBASIC22.85■■□□□ 1.25
Trav8-1A0A075B641 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav8-1A0A075B641 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trav8-1A0A075B641 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav8-1A0A075B641 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav8-1A0A075B641 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trav8-1A0A075B641 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trav8-1A0A075B641 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trav8-1A0A075B641 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Trav8-1A0A075B641 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav8-1A0A075B641 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
Trav8-1A0A075B641 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav8-1A0A075B641 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trav8-1A0A075B641 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav8-1A0A075B641 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav8-1A0A075B641 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trav8-1A0A075B641 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Trav8-1A0A075B641 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.92■□□□□ 0.94
Trav8-1A0A075B641 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav8-1A0A075B641 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav8-1A0A075B641 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trav8-1A0A075B641 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.81■□□□□ 0.92
Trav8-1A0A075B641 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trav8-1A0A075B641 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav8-1A0A075B641 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trav8-1A0A075B641 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.72■□□□□ 0.91
Trav8-1A0A075B641 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Trav8-1A0A075B641 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.69■□□□□ 0.9
Trav8-1A0A075B641 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav8-1A0A075B641 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav8-1A0A075B641 Gm15042-201ENSMUST00000120212 883 ntBASIC20.6■□□□□ 0.89
Trav8-1A0A075B641 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav8-1A0A075B641 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav8-1A0A075B641 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trav8-1A0A075B641 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trav8-1A0A075B641 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.33■□□□□ 0.84
Trav8-1A0A075B641 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav8-1A0A075B641 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trav8-1A0A075B641 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8-1A0A075B641 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav8-1A0A075B641 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Trav8-1A0A075B641 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav8-1A0A075B641 Gm15045-201ENSMUST00000117359 883 ntBASIC20.2■□□□□ 0.82
Trav8-1A0A075B641 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.2■□□□□ 0.82
Trav8-1A0A075B641 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav8-1A0A075B641 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav8-1A0A075B641 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.1■□□□□ 0.81
Trav8-1A0A075B641 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav8-1A0A075B641 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Trav8-1A0A075B641 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav8-1A0A075B641 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav8-1A0A075B641 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Trav8-1A0A075B641 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trav8-1A0A075B641 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav8-1A0A075B641 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Trav8-1A0A075B641 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav8-1A0A075B641 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav8-1A0A075B641 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav8-1A0A075B641 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.83■□□□□ 0.76
Trav8-1A0A075B641 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav8-1A0A075B641 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Trav8-1A0A075B641 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav8-1A0A075B641 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav8-1A0A075B641 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav8-1A0A075B641 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav8-1A0A075B641 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav8-1A0A075B641 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav8-1A0A075B641 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.72■□□□□ 0.75
Trav8-1A0A075B641 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav8-1A0A075B641 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19.68■□□□□ 0.74
Trav8-1A0A075B641 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav8-1A0A075B641 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav8-1A0A075B641 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav8-1A0A075B641 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trav8-1A0A075B641 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav8-1A0A075B641 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav8-1A0A075B641 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.57■□□□□ 0.72
Trav8-1A0A075B641 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.56■□□□□ 0.72
Trav8-1A0A075B641 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav8-1A0A075B641 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav8-1A0A075B641 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav8-1A0A075B641 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8-1A0A075B641 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.51■□□□□ 0.71
Trav8-1A0A075B641 Gm24109-201ENSMUST00000175489 103 ntBASIC19.49■□□□□ 0.71
Trav8-1A0A075B641 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8-1A0A075B641 Zxda-201ENSMUST00000117281 2621 ntBASIC19.47■□□□□ 0.71
Trav8-1A0A075B641 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav8-1A0A075B641 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8-1A0A075B641 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav8-1A0A075B641 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav8-1A0A075B641 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav8-1A0A075B641 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Trav8-1A0A075B641 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav8-1A0A075B641 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms