Protein–RNA interactions for Protein: A0A075B699

Trav9d-1, T cell receptor alpha variable 9D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9d-1A0A075B699 Gm25239-201ENSMUST00000174915 86 ntBASIC27.22■■□□□ 1.95
Trav9d-1A0A075B699 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Trav9d-1A0A075B699 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trav9d-1A0A075B699 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
Trav9d-1A0A075B699 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Trav9d-1A0A075B699 Psd-208ENSMUST00000224556 2034 ntBASIC24.67■■□□□ 1.54
Trav9d-1A0A075B699 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Trav9d-1A0A075B699 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trav9d-1A0A075B699 Gm15042-201ENSMUST00000120212 883 ntBASIC24.31■■□□□ 1.48
Trav9d-1A0A075B699 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trav9d-1A0A075B699 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Trav9d-1A0A075B699 Gm15045-201ENSMUST00000117359 883 ntBASIC23.86■■□□□ 1.41
Trav9d-1A0A075B699 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trav9d-1A0A075B699 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trav9d-1A0A075B699 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.79■■□□□ 1.4
Trav9d-1A0A075B699 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trav9d-1A0A075B699 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trav9d-1A0A075B699 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav9d-1A0A075B699 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav9d-1A0A075B699 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trav9d-1A0A075B699 Gm24109-201ENSMUST00000175489 103 ntBASIC23.34■■□□□ 1.33
Trav9d-1A0A075B699 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trav9d-1A0A075B699 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav9d-1A0A075B699 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav9d-1A0A075B699 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trav9d-1A0A075B699 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav9d-1A0A075B699 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav9d-1A0A075B699 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav9d-1A0A075B699 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.05■■□□□ 1.28
Trav9d-1A0A075B699 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trav9d-1A0A075B699 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trav9d-1A0A075B699 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.89■■□□□ 1.26
Trav9d-1A0A075B699 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trav9d-1A0A075B699 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trav9d-1A0A075B699 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav9d-1A0A075B699 Gm23366-201ENSMUST00000175022 89 ntBASIC22.79■■□□□ 1.24
Trav9d-1A0A075B699 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trav9d-1A0A075B699 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Trav9d-1A0A075B699 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav9d-1A0A075B699 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Trav9d-1A0A075B699 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav9d-1A0A075B699 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.58■■□□□ 1.21
Trav9d-1A0A075B699 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Trav9d-1A0A075B699 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.45■■□□□ 1.18
Trav9d-1A0A075B699 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.43■■□□□ 1.18
Trav9d-1A0A075B699 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav9d-1A0A075B699 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav9d-1A0A075B699 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.36■■□□□ 1.17
Trav9d-1A0A075B699 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav9d-1A0A075B699 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Trav9d-1A0A075B699 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Trav9d-1A0A075B699 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.21■■□□□ 1.15
Trav9d-1A0A075B699 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav9d-1A0A075B699 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav9d-1A0A075B699 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav9d-1A0A075B699 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav9d-1A0A075B699 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.92■■□□□ 1.1
Trav9d-1A0A075B699 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav9d-1A0A075B699 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav9d-1A0A075B699 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav9d-1A0A075B699 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav9d-1A0A075B699 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav9d-1A0A075B699 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav9d-1A0A075B699 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.8■■□□□ 1.08
Trav9d-1A0A075B699 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav9d-1A0A075B699 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Trav9d-1A0A075B699 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trav9d-1A0A075B699 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav9d-1A0A075B699 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Trav9d-1A0A075B699 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trav9d-1A0A075B699 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
Trav9d-1A0A075B699 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.58■■□□□ 1.05
Trav9d-1A0A075B699 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav9d-1A0A075B699 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav9d-1A0A075B699 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav9d-1A0A075B699 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.51■■□□□ 1.03
Trav9d-1A0A075B699 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav9d-1A0A075B699 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav9d-1A0A075B699 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav9d-1A0A075B699 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav9d-1A0A075B699 Gm27325-201ENSMUST00000175467 74 ntBASIC21.39■■□□□ 1.01
Trav9d-1A0A075B699 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav9d-1A0A075B699 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trav9d-1A0A075B699 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav9d-1A0A075B699 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav9d-1A0A075B699 Gm25238-201ENSMUST00000174914 89 ntBASIC21.31■■□□□ 1
Trav9d-1A0A075B699 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav9d-1A0A075B699 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Trav9d-1A0A075B699 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav9d-1A0A075B699 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
Trav9d-1A0A075B699 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trav9d-1A0A075B699 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trav9d-1A0A075B699 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav9d-1A0A075B699 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav9d-1A0A075B699 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trav9d-1A0A075B699 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav9d-1A0A075B699 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav9d-1A0A075B699 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.2■□□□□ 0.98
Trav9d-1A0A075B699 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav9d-1A0A075B699 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms