RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W MEI4P29467 408 aa3.35□□□□□ -1.87
USE1YGL098W IMP2'P32351 346 aa3.35□□□□□ -1.87
USE1YGL098W PRP19P32523 503 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W MIA40P36046 403 aa3.35□□□□□ -1.87
USE1YGL098W TGL4P36165 910 aa3.35□□□□□ -1.87
USE1YGL098W SLX1P38324 304 aa3.35□□□□□ -1.87
USE1YGL098W MBP1P39678 833 aa3.35□□□□□ -1.87
USE1YGL098W SAH1P39954 449 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W SLX8P40072 274 aa3.35□□□□□ -1.87
USE1YGL098W YER156CP40093 338 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W YJL070CP40361 888 aa3.35□□□□□ -1.87
USE1YGL098W IES1P43579 692 aa3.35□□□□□ -1.87
USE1YGL098W STB4P50104 949 aa3.35□□□□□ -1.87
USE1YGL098W PRP43P53131 767 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W DRN1P53255 507 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W MEC3Q02574 474 aa3.35□□□□□ -1.87
USE1YGL098W SHR3Q02774 210 aa3.35□□□□□ -1.87
USE1YGL098W TY1A-DR2Q03964 440 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W RRP17Q04031 235 aaPredicted RBP3.35□□□□□ -1.87
USE1YGL098W BUD22Q04347 519 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W YMR018WQ04364 514 aa3.35□□□□□ -1.87
USE1YGL098W CAB1Q04430 367 aa3.35□□□□□ -1.87
USE1YGL098W GLO2Q05584 274 aa3.35□□□□□ -1.87
USE1YGL098W PNP1Q05788 311 aa3.35□□□□□ -1.87
USE1YGL098W DXO1Q06349 442 aa3.35□□□□□ -1.87
USE1YGL098W ARR2Q06597 130 aa3.35□□□□□ -1.87
USE1YGL098W VPS36Q06696 566 aa3.35□□□□□ -1.87
USE1YGL098W PUS7Q08647 676 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W MED2Q12124 431 aa3.35□□□□□ -1.87
USE1YGL098W MNL2Q12205 849 aa3.35□□□□□ -1.87
USE1YGL098W YRM1Q12340 786 aa3.35□□□□□ -1.87
USE1YGL098W TRM11Q12463 433 aa3.35□□□□□ -1.87
USE1YGL098W ATG11Q12527 1178 aa3.35□□□□□ -1.87
USE1YGL098W RAD61Q99359 647 aa3.35□□□□□ -1.87
USE1YGL098W NUP188P52593 1655 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W TY1B-JR2P47100 1755 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W TY1B-ER2Q03619 1755 aa3.35□□□□□ -1.87
USE1YGL098W TY1B-MR1Q04214 1755 aa3.35□□□□□ -1.87
USE1YGL098W TY1B-MR2Q04670 1755 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W TY1B-LR1Q12088 1755 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W TY1B-NL1Q12112 1755 aa3.35□□□□□ -1.87
USE1YGL098W TY1B-GR1Q12141 1755 aa3.35□□□□□ -1.87
USE1YGL098W TY1B-BLQ12490 1755 aa3.35□□□□□ -1.87
USE1YGL098W DUR1,2P32528 1835 aaKnown RBP3.35□□□□□ -1.87
USE1YGL098W SSB1P11484 613 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W FUS1P11710 512 aa3.34□□□□□ -1.87
USE1YGL098W KIN2P13186 1147 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W CMP2P14747 604 aa3.34□□□□□ -1.87
USE1YGL098W MSD1P15179 658 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W STF2P16965 84 aa3.34□□□□□ -1.87
USE1YGL098W PRP9P19736 530 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W OPI1P21957 404 aa3.34□□□□□ -1.87
USE1YGL098W DBF2P22204 572 aa3.34□□□□□ -1.87
USE1YGL098W FPS1P23900 669 aa3.34□□□□□ -1.87
USE1YGL098W MCM3P24279 971 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W TPS2P31688 896 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W SUV3P32580 737 aa3.34□□□□□ -1.87
USE1YGL098W FRD1P32614 470 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W AFR1P33304 620 aa3.34□□□□□ -1.87
USE1YGL098W BLI1P35727 113 aa3.34□□□□□ -1.87
USE1YGL098W APL2P36000 726 aaPredicted RBP3.34□□□□□ -1.87
USE1YGL098W UBP11P36026 717 aa3.34□□□□□ -1.87
USE1YGL098W GEF1P37020 779 aa3.34□□□□□ -1.87
USE1YGL098W MRPL16P38064 232 aa3.34□□□□□ -1.87
USE1YGL098W GRS1P38088 690 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W MAK5P38112 773 aaPredicted RBP3.34□□□□□ -1.87
USE1YGL098W GIP1P38229 639 aa3.34□□□□□ -1.87
USE1YGL098W SLM4P38247 162 aa3.34□□□□□ -1.87
USE1YGL098W YBR138CP38277 524 aa3.34□□□□□ -1.87
USE1YGL098W YHR112CP38716 378 aa3.34□□□□□ -1.87
USE1YGL098W RRF1P38771 230 aa3.34□□□□□ -1.87
USE1YGL098W DYS1P38791 387 aa3.34□□□□□ -1.87
USE1YGL098W TRM5P38793 499 aa3.34□□□□□ -1.87
USE1YGL098W APE4P38821 490 aa3.34□□□□□ -1.87
USE1YGL098W KEL1P38853 1164 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W VMA7P39111 118 aa3.34□□□□□ -1.87
USE1YGL098W GEM1P39722 662 aa3.34□□□□□ -1.87
USE1YGL098W RPH1P39956 796 aa3.34□□□□□ -1.87
USE1YGL098W TMN3P40071 706 aa3.34□□□□□ -1.87
USE1YGL098W YER186CP40101 306 aa3.34□□□□□ -1.87
USE1YGL098W SSB2P40150 613 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W JLP2P40206 208 aa3.34□□□□□ -1.87
USE1YGL098W YTA12P40341 825 aa3.34□□□□□ -1.87
USE1YGL098W DPH1P40487 425 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W ALA1P40825 983 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W SNZ3P43545 298 aa3.34□□□□□ -1.87
USE1YGL098W EPL1P43572 832 aa3.34□□□□□ -1.87
USE1YGL098W MNN11P46985 422 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W BFA1P47113 574 aa3.34□□□□□ -1.87
USE1YGL098W BIR1P47134 954 aa3.34□□□□□ -1.87
USE1YGL098W NUP84P52891 726 aa3.34□□□□□ -1.87
USE1YGL098W MRPL50P53724 139 aa3.34□□□□□ -1.87
USE1YGL098W ARC35P53731 342 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W SNZ2P53824 298 aa3.34□□□□□ -1.87
USE1YGL098W RPL22BP56628 122 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W MDM1Q01846 1127 aa3.34□□□□□ -1.87
USE1YGL098W UTP6Q02354 440 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W INA17Q02888 182 aa3.34□□□□□ -1.87
USE1YGL098W TAF12Q03761 539 aa3.34□□□□□ -1.87
USE1YGL098W RAD30Q04049 632 aa3.34□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms