RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 SIN3AQ96ST3 1273 aa15.64■□□□□ 0.09
SNIP1-204ENST00000638725 WDR97A6NE52 1622 aa15.63■□□□□ 0.09
SNIP1-204ENST00000638725 CARMIL1Q5VZK9 1371 aa15.63■□□□□ 0.09
SNIP1-204ENST00000638725 FAM50AQ14320 339 aaKnown RBP15.63■□□□□ 0.09
SNIP1-204ENST00000638725 DDX10Q13206 875 aaKnown RBP15.61■□□□□ 0.09
SNIP1-204ENST00000638725 PRDM2Q13029 1718 aa15.61■□□□□ 0.09
SNIP1-204ENST00000638725 FGD5Q6ZNL6 1462 aa15.58■□□□□ 0.09
SNIP1-204ENST00000638725 P3H3Q8IVL6 736 aa15.58■□□□□ 0.08
SNIP1-204ENST00000638725 PCF11O94913 1555 aaKnown RBP15.57■□□□□ 0.08
SNIP1-204ENST00000638725 CFAP43Q8NDM7 1665 aa15.57■□□□□ 0.08
SNIP1-204ENST00000638725 BCANQ96GW7 911 aa15.57■□□□□ 0.08
SNIP1-204ENST00000638725 FHAD1B1AJZ9 1412 aa15.56■□□□□ 0.08
SNIP1-204ENST00000638725 ATP1B4Q9UN42 357 aaPredicted RBP15.56■□□□□ 0.08
SNIP1-204ENST00000638725 HIRIP3Q9BW71 556 aaPredicted RBP15.54■□□□□ 0.08
SNIP1-204ENST00000638725 PPP1R15AO75807 674 aaPredicted RBP15.53■□□□□ 0.08
SNIP1-204ENST00000638725 CADPSQ9ULU8 1353 aa15.53■□□□□ 0.08
SNIP1-204ENST00000638725 FKBP8Q14318 412 aa15.53■□□□□ 0.08
SNIP1-204ENST00000638725 FHOD3Q2V2M9 1422 aa15.51■□□□□ 0.07
SNIP1-204ENST00000638725 TIMELESSQ9UNS1 1208 aa15.49■□□□□ 0.07
SNIP1-204ENST00000638725 FYCO1Q9BQS8 1478 aa15.45■□□□□ 0.06
SNIP1-204ENST00000638725 TRIM52Q96A61 297 aa15.45■□□□□ 0.06
SNIP1-204ENST00000638725 ANP32EQ9BTT0 268 aa15.45■□□□□ 0.06
SNIP1-204ENST00000638725 ANP32CO43423 234 aa15.44■□□□□ 0.06
SNIP1-204ENST00000638725 CCER2I3L3R5 266 aa15.43■□□□□ 0.06
SNIP1-204ENST00000638725 CASKIN1Q8WXD9 1431 aa15.43■□□□□ 0.06
SNIP1-204ENST00000638725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.43■□□□□ 0.06
SNIP1-204ENST00000638725 RAD54L2Q9Y4B4 1467 aa15.42■□□□□ 0.06
SNIP1-204ENST00000638725 EFCAB5A4FU69 1503 aa15.41■□□□□ 0.06
SNIP1-204ENST00000638725 NEFLP07196 543 aa15.41■□□□□ 0.06
SNIP1-204ENST00000638725 FGD6Q6ZV73 1430 aa15.4■□□□□ 0.06
SNIP1-204ENST00000638725 FANCD2Q9BXW9 1451 aa15.4■□□□□ 0.06
SNIP1-204ENST00000638725 TONSLQ96HA7 1378 aa15.4■□□□□ 0.06
SNIP1-204ENST00000638725 AQRO60306 1485 aaKnown RBP eCLIP15.39■□□□□ 0.05
SNIP1-204ENST00000638725 CCDC18Q5T9S5 1454 aa15.39■□□□□ 0.05
SNIP1-204ENST00000638725 ABCA10Q8WWZ4 1543 aa15.37■□□□□ 0.05
SNIP1-204ENST00000638725 PTPRKQ15262 1439 aa15.37■□□□□ 0.05
SNIP1-204ENST00000638725 POLA1P09884 1462 aaPredicted RBP15.35■□□□□ 0.05
SNIP1-204ENST00000638725 DNMBPQ6XZF7 1577 aa15.35■□□□□ 0.05
SNIP1-204ENST00000638725 CTTNBP2Q8WZ74 1663 aa15.35■□□□□ 0.05
SNIP1-204ENST00000638725 UACAQ9BZF9 1416 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 MTUS2Q5JR59 1369 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 CC2D2AQ9P2K1 1620 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 SNAPC4Q5SXM2 1469 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 HFM1A2PYH4 1435 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 FMN1Q68DA7 1419 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 PTPN23Q9H3S7 1636 aa15.34■□□□□ 0.05
SNIP1-204ENST00000638725 TOPBP1Q92547 1522 aa15.33■□□□□ 0.04
SNIP1-204ENST00000638725 CUL7Q14999 1698 aa15.33■□□□□ 0.04
SNIP1-204ENST00000638725 RBM19Q9Y4C8 960 aaKnown RBP15.32■□□□□ 0.04
SNIP1-204ENST00000638725 NAIPQ13075 1403 aa15.3■□□□□ 0.04
SNIP1-204ENST00000638725 LRRIQ1Q96JM4 1722 aa15.28■□□□□ 0.04
SNIP1-204ENST00000638725 NCOA2Q15596 1464 aa15.28■□□□□ 0.04
SNIP1-204ENST00000638725 KDM5BQ9UGL1 1544 aa15.28■□□□□ 0.04
SNIP1-204ENST00000638725 MYOM3Q5VTT5 1437 aa15.27■□□□□ 0.03
SNIP1-204ENST00000638725 NESP48681 1621 aa15.26■□□□□ 0.03
SNIP1-204ENST00000638725 HNRNPUQ00839 825 aaKnown RBP eCLIP15.24■□□□□ 0.03
SNIP1-204ENST00000638725 SAMD9Q5K651 1589 aa15.24■□□□□ 0.03
SNIP1-204ENST00000638725 GRIN2BQ13224 1484 aa15.24■□□□□ 0.03
SNIP1-204ENST00000638725 SUPT6HQ7KZ85 1726 aaKnown RBP15.22■□□□□ 0.03
SNIP1-204ENST00000638725 RRP7BPQ9NSQ0 103 aa15.21■□□□□ 0.03
SNIP1-204ENST00000638725 WASHC2AQ641Q2 1341 aa15.2■□□□□ 0.02
SNIP1-204ENST00000638725 EHBP1L1Q8N3D4 1523 aa15.2■□□□□ 0.02
SNIP1-204ENST00000638725 HSPA5P11021 654 aaKnown RBP15.2■□□□□ 0.02
SNIP1-204ENST00000638725 IRX6P78412 446 aaPredicted RBP15.2■□□□□ 0.02
SNIP1-204ENST00000638725 TDRD9Q8NDG6 1382 aaKnown RBP15.2■□□□□ 0.02
SNIP1-204ENST00000638725 CHIC2Q9UKJ5 165 aa15.19■□□□□ 0.02
SNIP1-204ENST00000638725 UGGT2Q9NYU1 1516 aa15.18■□□□□ 0.02
SNIP1-204ENST00000638725 THOC2Q8NI27 1593 aaKnown RBP15.18■□□□□ 0.02
SNIP1-204ENST00000638725 URB2Q14146 1524 aaKnown RBP15.18■□□□□ 0.02
SNIP1-204ENST00000638725 MAGI3Q5TCQ9 1506 aa15.18■□□□□ 0.02
SNIP1-204ENST00000638725 DENND4BO75064 1496 aaPredicted RBP15.18■□□□□ 0.02
SNIP1-204ENST00000638725 ABCA5Q8WWZ7 1642 aa15.16■□□□□ 0.02
SNIP1-204ENST00000638725 ARHGEF11O15085 1522 aa15.16■□□□□ 0.02
SNIP1-204ENST00000638725 MSH5O43196 834 aa15.14■□□□□ 0.01
SNIP1-204ENST00000638725 GAPVD1Q14C86 1478 aa15.14■□□□□ 0.01
SNIP1-204ENST00000638725 HECW1Q76N89 1606 aa15.14■□□□□ 0.01
SNIP1-204ENST00000638725 KDM6BO15054 1643 aa15.14■□□□□ 0.01
SNIP1-204ENST00000638725 GCC2Q8IWJ2 1684 aa15.14■□□□□ 0.01
SNIP1-204ENST00000638725 EIF4G2P78344 907 aaKnown RBP eCLIP15.13■□□□□ 0.01
SNIP1-204ENST00000638725 CCDC184Q52MB2 194 aa15.13■□□□□ 0.01
SNIP1-204ENST00000638725 TCOF1Q13428 1488 aaKnown RBP15.12■□□□□ 0.01
SNIP1-204ENST00000638725 CNTLNQ9NXG0 1405 aa15.12■□□□□ 0.01
SNIP1-204ENST00000638725 CDK11AQ9UQ88 783 aaPredicted RBP15.1■□□□□ 0.01
SNIP1-204ENST00000638725 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
SNIP1-204ENST00000638725 LAMC3Q9Y6N6 1575 aa15.09■□□□□ 0.01
SNIP1-204ENST00000638725 C11orf95C9JLR9 678 aaPredicted RBP15.09■□□□□ 0.01
SNIP1-204ENST00000638725 FOXD1Q16676 465 aa15.09■□□□□ 0.01
SNIP1-204ENST00000638725 MPHOSPH9Q99550 1183 aa15.09■□□□□ 0.01
SNIP1-204ENST00000638725 KIF21AQ7Z4S6 1674 aa15.09■□□□□ 0.01
SNIP1-204ENST00000638725 BCL11AQ9H165 835 aa15.08■□□□□ 0.01
SNIP1-204ENST00000638725 AKNAQ7Z591 1439 aa15.08■□□□□ 0
SNIP1-204ENST00000638725 FANCIQ9NVI1 1328 aa15.06■□□□□ 0
SNIP1-204ENST00000638725 PRKRIP1Q9H875 184 aaPredicted RBP15.06■□□□□ 0
SNIP1-204ENST00000638725 CCDC7Q96M83 1385 aa15.06■□□□□ 0
SNIP1-204ENST00000638725 NCOA1Q15788 1441 aa15.06■□□□□ 0
SNIP1-204ENST00000638725 FAM9BQ8IZU0 186 aa15.06■□□□□ 0
SNIP1-204ENST00000638725 ARID3CA6NKF2 412 aa15.05■□□□□ -0
SNIP1-204ENST00000638725 EPRSP07814 1512 aaKnown RBP15.05■□□□□ -0
SNIP1-204ENST00000638725 CDK13Q14004 1512 aaKnown RBP15.05■□□□□ -0
SNIP1-204ENST00000638725 MRS2Q9HD23 443 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms