RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 NISCHQ9Y2I1 1504 aa21.95■■□□□ 1.1
SNIP1-204ENST00000638725 SHROOM4Q9ULL8 1493 aa19.01■□□□□ 0.63
SNIP1-204ENST00000638725 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
SNIP1-204ENST00000638725 ZCCHC6Q5VYS8 1495 aaKnown RBP18.62■□□□□ 0.57
SNIP1-204ENST00000638725 CCDC180Q9P1Z9 1646 aa18.49■□□□□ 0.55
SNIP1-204ENST00000638725 MYO15BQ96JP2 1530 aa18.35■□□□□ 0.53
SNIP1-204ENST00000638725 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
SNIP1-204ENST00000638725 DCAF8L2P0C7V8 631 aa18.22■□□□□ 0.51
SNIP1-204ENST00000638725 HRCP23327 699 aa18.19■□□□□ 0.5
SNIP1-204ENST00000638725 PCGF6Q9BYE7 350 aa18.04■□□□□ 0.48
SNIP1-204ENST00000638725 DCAF1Q9Y4B6 1507 aa17.95■□□□□ 0.46
SNIP1-204ENST00000638725 PPARGC1BQ86YN6 1023 aaKnown RBP17.84■□□□□ 0.45
SNIP1-204ENST00000638725 LOC105371045A0A1W2PR82 267 aa17.83■□□□□ 0.44
SNIP1-204ENST00000638725 ABCC9O60706 1549 aa17.62■□□□□ 0.41
SNIP1-204ENST00000638725 TRIM26Q12899 539 aaPredicted RBP17.59■□□□□ 0.41
SNIP1-204ENST00000638725 RSF1Q96T23 1441 aaPredicted RBP17.49■□□□□ 0.39
SNIP1-204ENST00000638725 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
SNIP1-204ENST00000638725 TRIM41Q8WV44 630 aa17.4■□□□□ 0.38
SNIP1-204ENST00000638725 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
SNIP1-204ENST00000638725 FAM9AQ8IZU1 332 aaPredicted RBP17.33■□□□□ 0.36
SNIP1-204ENST00000638725 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
SNIP1-204ENST00000638725 EHMT2Q96KQ7 1210 aa17.23■□□□□ 0.35
SNIP1-204ENST00000638725 CECR2Q9BXF3 1484 aa17.16■□□□□ 0.34
SNIP1-204ENST00000638725 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
SNIP1-204ENST00000638725 NACADO15069 1562 aa17.04■□□□□ 0.32
SNIP1-204ENST00000638725 WIZO95785 1651 aa17.04■□□□□ 0.32
SNIP1-204ENST00000638725 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
SNIP1-204ENST00000638725 BAZ1AQ9NRL2 1556 aaPredicted RBP16.92■□□□□ 0.3
SNIP1-204ENST00000638725 EIF4G1Q04637 1599 aaKnown RBP16.9■□□□□ 0.3
SNIP1-204ENST00000638725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.89■□□□□ 0.29
SNIP1-204ENST00000638725 CCER1Q8TC90 406 aaPredicted RBP16.83■□□□□ 0.29
SNIP1-204ENST00000638725 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
SNIP1-204ENST00000638725 ABCC8Q09428 1581 aa16.77■□□□□ 0.28
SNIP1-204ENST00000638725 CCDC88BA6NC98 1476 aa16.75■□□□□ 0.27
SNIP1-204ENST00000638725 TTBK1Q5TCY1 1321 aaPredicted RBP16.73■□□□□ 0.27
SNIP1-204ENST00000638725 TOP2AP11388 1531 aaKnown RBP16.73■□□□□ 0.27
SNIP1-204ENST00000638725 WRNQ14191 1432 aaPredicted RBP eCLIP16.71■□□□□ 0.27
SNIP1-204ENST00000638725 CEP162Q5TB80 1403 aa16.69■□□□□ 0.26
SNIP1-204ENST00000638725 ACIN1Q9UKV3 1341 aaKnown RBP16.68■□□□□ 0.26
SNIP1-204ENST00000638725 SMARCA2P51531 1590 aa16.67■□□□□ 0.26
SNIP1-204ENST00000638725 SMARCA4P51532 1647 aa16.67■□□□□ 0.26
SNIP1-204ENST00000638725 NEUROD1Q13562 356 aa16.66■□□□□ 0.26
SNIP1-204ENST00000638725 SOGA1O94964 1423 aa16.66■□□□□ 0.26
SNIP1-204ENST00000638725 DIEXFQ68CQ4 756 aaKnown RBP16.64■□□□□ 0.25
SNIP1-204ENST00000638725 TNIKQ9UKE5 1360 aa16.62■□□□□ 0.25
SNIP1-204ENST00000638725 RUSC2Q8N2Y8 1516 aa16.58■□□□□ 0.24
SNIP1-204ENST00000638725 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
SNIP1-204ENST00000638725 UBTFP17480 764 aaKnown RBP16.55■□□□□ 0.24
SNIP1-204ENST00000638725 EEA1Q15075 1411 aa16.54■□□□□ 0.24
SNIP1-204ENST00000638725 UNC13AQ9UPW8 1703 aa16.53■□□□□ 0.24
SNIP1-204ENST00000638725 CENPBP07199 599 aaPredicted RBP16.52■□□□□ 0.24
SNIP1-204ENST00000638725 GTF3C3Q9Y5Q9 886 aa16.52■□□□□ 0.23
SNIP1-204ENST00000638725 GOLGA3Q08378 1498 aa16.49■□□□□ 0.23
SNIP1-204ENST00000638725 ZNF316A6NFI3 1004 aaPredicted RBP16.44■□□□□ 0.22
SNIP1-204ENST00000638725 HNRNPUL2Q1KMD3 747 aaKnown RBP16.37■□□□□ 0.21
SNIP1-204ENST00000638725 CEP164Q9UPV0 1460 aa16.36■□□□□ 0.21
SNIP1-204ENST00000638725 SYNJ1O43426 1573 aa16.35■□□□□ 0.21
SNIP1-204ENST00000638725 PABPN1Q86U42 306 aaKnown RBP eCLIP16.35■□□□□ 0.21
SNIP1-204ENST00000638725 KIF21BO75037 1637 aa16.33■□□□□ 0.2
SNIP1-204ENST00000638725 CLIP1P30622 1438 aa16.32■□□□□ 0.2
SNIP1-204ENST00000638725 YTHDC1Q96MU7 727 aaKnown RBP16.32■□□□□ 0.2
SNIP1-204ENST00000638725 BICRAQ9NZM4 1560 aa16.3■□□□□ 0.2
SNIP1-204ENST00000638725 PEG3Q9GZU2 1588 aa16.29■□□□□ 0.2
SNIP1-204ENST00000638725 VPS8Q8N3P4 1428 aa16.28■□□□□ 0.2
SNIP1-204ENST00000638725 MIER1Q8N108 512 aa16.27■□□□□ 0.2
SNIP1-204ENST00000638725 RAPGEF2Q9Y4G8 1499 aa16.24■□□□□ 0.19
SNIP1-204ENST00000638725 BAZ1BQ9UIG0 1483 aaKnown RBP16.22■□□□□ 0.19
SNIP1-204ENST00000638725 RANGAP1P46060 587 aaPredicted RBP16.21■□□□□ 0.19
SNIP1-204ENST00000638725 APLP2Q06481 763 aa16.21■□□□□ 0.19
SNIP1-204ENST00000638725 ATAD2BQ9ULI0 1458 aa16.18■□□□□ 0.18
SNIP1-204ENST00000638725 TOP2BQ02880 1626 aa16.09■□□□□ 0.17
SNIP1-204ENST00000638725 DHX57Q6P158 1386 aaKnown RBP16.05■□□□□ 0.16
SNIP1-204ENST00000638725 ARAP1Q96P48 1450 aa16.03■□□□□ 0.16
SNIP1-204ENST00000638725 BIVM-ERCC5R4GMW8 1640 aa16.02■□□□□ 0.16
SNIP1-204ENST00000638725 CLSPNQ9HAW4 1339 aa16.01■□□□□ 0.15
SNIP1-204ENST00000638725 ERICH3Q5RHP9 1530 aa16.01■□□□□ 0.15
SNIP1-204ENST00000638725 PRXQ9BXM0 1461 aa16.01■□□□□ 0.15
SNIP1-204ENST00000638725 MYT1Q01538 1121 aa16.01■□□□□ 0.15
SNIP1-204ENST00000638725 KANK4Q5T7N3 995 aaPredicted RBP16.01■□□□□ 0.15
SNIP1-204ENST00000638725 RRBP1Q9P2E9 1410 aaKnown RBP15.93■□□□□ 0.14
SNIP1-204ENST00000638725 CUX1P39880 1505 aa15.9■□□□□ 0.14
SNIP1-204ENST00000638725 KIF27Q86VH2 1401 aa15.87■□□□□ 0.13
SNIP1-204ENST00000638725 CUX2O14529 1486 aa15.86■□□□□ 0.13
SNIP1-204ENST00000638725 CCNB3Q8WWL7 1395 aa15.86■□□□□ 0.13
SNIP1-204ENST00000638725 ARHGAP35Q9NRY4 1499 aa15.85■□□□□ 0.13
SNIP1-204ENST00000638725 ITGAEP38570 1179 aa15.84■□□□□ 0.13
SNIP1-204ENST00000638725 SUPT16HQ9Y5B9 1047 aaKnown RBP15.84■□□□□ 0.13
SNIP1-204ENST00000638725 HMGXB3Q12766 1538 aa15.8■□□□□ 0.12
SNIP1-204ENST00000638725 NCAPD3P42695 1498 aa15.79■□□□□ 0.12
SNIP1-204ENST00000638725 RAB3GAP2Q9H2M9 1393 aa15.76■□□□□ 0.11
SNIP1-204ENST00000638725 CFTRP13569 1480 aa15.75■□□□□ 0.11
SNIP1-204ENST00000638725 MAPKBP1O60336 1514 aa15.75■□□□□ 0.11
SNIP1-204ENST00000638725 KCNH8Q96L42 1107 aa15.73■□□□□ 0.11
SNIP1-204ENST00000638725 TIAM1Q13009 1591 aa15.71■□□□□ 0.11
SNIP1-204ENST00000638725 IGF1RP08069 1367 aa15.69■□□□□ 0.1
SNIP1-204ENST00000638725 SETD5Q9C0A6 1442 aa15.67■□□□□ 0.1
SNIP1-204ENST00000638725 MAP3K1Q13233 1512 aa15.66■□□□□ 0.1
SNIP1-204ENST00000638725 TSHZ2Q9NRE2 1034 aa15.65■□□□□ 0.1
SNIP1-204ENST00000638725 PHLDB1Q86UU1 1377 aa15.65■□□□□ 0.1
SNIP1-204ENST00000638725 LRRC9Q6ZRR7 1453 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms