RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 CFAP43Q8NDM7 1665 aa17.48■□□□□ 0.39
SHMT1-208ENST00000582352 PHLDB1Q86UU1 1377 aa17.47■□□□□ 0.39
SHMT1-208ENST00000582352 FGD5Q6ZNL6 1462 aa17.46■□□□□ 0.38
SHMT1-208ENST00000582352 FAM50AQ14320 339 aaKnown RBP17.45■□□□□ 0.38
SHMT1-208ENST00000582352 WDR97A6NE52 1622 aa17.44■□□□□ 0.38
SHMT1-208ENST00000582352 PCF11O94913 1555 aaKnown RBP17.44■□□□□ 0.38
SHMT1-208ENST00000582352 KCNH8Q96L42 1107 aa17.42■□□□□ 0.38
SHMT1-208ENST00000582352 CADPSQ9ULU8 1353 aa17.4■□□□□ 0.38
SHMT1-208ENST00000582352 TSHZ2Q9NRE2 1034 aa17.39■□□□□ 0.37
SHMT1-208ENST00000582352 DDX10Q13206 875 aaKnown RBP17.38■□□□□ 0.37
SHMT1-208ENST00000582352 SIN3AQ96ST3 1273 aa17.38■□□□□ 0.37
SHMT1-208ENST00000582352 TIMELESSQ9UNS1 1208 aa17.37■□□□□ 0.37
SHMT1-208ENST00000582352 FYCO1Q9BQS8 1478 aa17.36■□□□□ 0.37
SHMT1-208ENST00000582352 ATP1B4Q9UN42 357 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-208ENST00000582352 P3H3Q8IVL6 736 aa17.34■□□□□ 0.37
SHMT1-208ENST00000582352 EFCAB5A4FU69 1503 aa17.33■□□□□ 0.37
SHMT1-208ENST00000582352 FHOD3Q2V2M9 1422 aa17.33■□□□□ 0.36
SHMT1-208ENST00000582352 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHMT1-208ENST00000582352 PPP1R15AO75807 674 aaPredicted RBP17.3■□□□□ 0.36
SHMT1-208ENST00000582352 CASKIN1Q8WXD9 1431 aa17.29■□□□□ 0.36
SHMT1-208ENST00000582352 BCANQ96GW7 911 aa17.28■□□□□ 0.36
SHMT1-208ENST00000582352 AQRO60306 1485 aaKnown RBP eCLIP17.28■□□□□ 0.36
SHMT1-208ENST00000582352 FKBP8Q14318 412 aa17.28■□□□□ 0.36
SHMT1-208ENST00000582352 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.35
SHMT1-208ENST00000582352 CTTNBP2Q8WZ74 1663 aa17.26■□□□□ 0.35
SHMT1-208ENST00000582352 CC2D2AQ9P2K1 1620 aa17.26■□□□□ 0.35
SHMT1-208ENST00000582352 ANP32CO43423 234 aa17.26■□□□□ 0.35
SHMT1-208ENST00000582352 NEFLP07196 543 aa17.26■□□□□ 0.35
SHMT1-208ENST00000582352 CCER2I3L3R5 266 aa17.25■□□□□ 0.35
SHMT1-208ENST00000582352 CUL7Q14999 1698 aa17.25■□□□□ 0.35
SHMT1-208ENST00000582352 DNMBPQ6XZF7 1577 aa17.25■□□□□ 0.35
SHMT1-208ENST00000582352 ABCA10Q8WWZ4 1543 aa17.24■□□□□ 0.35
SHMT1-208ENST00000582352 TONSLQ96HA7 1378 aa17.24■□□□□ 0.35
SHMT1-208ENST00000582352 FGD6Q6ZV73 1430 aa17.24■□□□□ 0.35
SHMT1-208ENST00000582352 HIRIP3Q9BW71 556 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-208ENST00000582352 FMN1Q68DA7 1419 aa17.23■□□□□ 0.35
SHMT1-208ENST00000582352 CCDC18Q5T9S5 1454 aa17.23■□□□□ 0.35
SHMT1-208ENST00000582352 RAD54L2Q9Y4B4 1467 aa17.22■□□□□ 0.35
SHMT1-208ENST00000582352 POLA1P09884 1462 aaPredicted RBP17.2■□□□□ 0.34
SHMT1-208ENST00000582352 ANP32EQ9BTT0 268 aa17.2■□□□□ 0.34
SHMT1-208ENST00000582352 MTUS2Q5JR59 1369 aa17.19■□□□□ 0.34
SHMT1-208ENST00000582352 HFM1A2PYH4 1435 aa17.18■□□□□ 0.34
SHMT1-208ENST00000582352 TRIM52Q96A61 297 aa17.18■□□□□ 0.34
SHMT1-208ENST00000582352 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
SHMT1-208ENST00000582352 UACAQ9BZF9 1416 aa17.18■□□□□ 0.34
SHMT1-208ENST00000582352 SNAPC4Q5SXM2 1469 aa17.18■□□□□ 0.34
SHMT1-208ENST00000582352 PTPN23Q9H3S7 1636 aa17.17■□□□□ 0.34
SHMT1-208ENST00000582352 PTPRKQ15262 1439 aa17.11■□□□□ 0.33
SHMT1-208ENST00000582352 MYOM3Q5VTT5 1437 aa17.11■□□□□ 0.33
SHMT1-208ENST00000582352 SAMD9Q5K651 1589 aa17.1■□□□□ 0.33
SHMT1-208ENST00000582352 NCOA2Q15596 1464 aa17.1■□□□□ 0.33
SHMT1-208ENST00000582352 SUPT6HQ7KZ85 1726 aaKnown RBP17.1■□□□□ 0.33
SHMT1-208ENST00000582352 NAIPQ13075 1403 aa17.1■□□□□ 0.33
SHMT1-208ENST00000582352 LRRIQ1Q96JM4 1722 aa17.09■□□□□ 0.33
SHMT1-208ENST00000582352 THOC2Q8NI27 1593 aaKnown RBP17.09■□□□□ 0.33
SHMT1-208ENST00000582352 EHBP1L1Q8N3D4 1523 aa17.08■□□□□ 0.32
SHMT1-208ENST00000582352 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
SHMT1-208ENST00000582352 RBM19Q9Y4C8 960 aaKnown RBP17.04■□□□□ 0.32
SHMT1-208ENST00000582352 NESP48681 1621 aa17.04■□□□□ 0.32
SHMT1-208ENST00000582352 KDM5BQ9UGL1 1544 aa17.03■□□□□ 0.32
SHMT1-208ENST00000582352 KIF21AQ7Z4S6 1674 aa17.03■□□□□ 0.32
SHMT1-208ENST00000582352 ABCA5Q8WWZ7 1642 aa17.03■□□□□ 0.32
SHMT1-208ENST00000582352 UGGT2Q9NYU1 1516 aa17.01■□□□□ 0.31
SHMT1-208ENST00000582352 HECW1Q76N89 1606 aa17■□□□□ 0.31
SHMT1-208ENST00000582352 GCC2Q8IWJ2 1684 aa17■□□□□ 0.31
SHMT1-208ENST00000582352 HNRNPUQ00839 825 aaKnown RBP eCLIP17■□□□□ 0.31
SHMT1-208ENST00000582352 URB2Q14146 1524 aaKnown RBP16.99■□□□□ 0.31
SHMT1-208ENST00000582352 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
SHMT1-208ENST00000582352 TDRD9Q8NDG6 1382 aaKnown RBP16.98■□□□□ 0.31
SHMT1-208ENST00000582352 ARHGEF11O15085 1522 aa16.98■□□□□ 0.31
SHMT1-208ENST00000582352 LAMC3Q9Y6N6 1575 aa16.95■□□□□ 0.3
SHMT1-208ENST00000582352 RRP7BPQ9NSQ0 103 aa16.95■□□□□ 0.3
SHMT1-208ENST00000582352 TCOF1Q13428 1488 aaKnown RBP16.95■□□□□ 0.3
SHMT1-208ENST00000582352 HSPA5P11021 654 aaKnown RBP16.94■□□□□ 0.3
SHMT1-208ENST00000582352 MAGI3Q5TCQ9 1506 aa16.94■□□□□ 0.3
SHMT1-208ENST00000582352 WASHC2AQ641Q2 1341 aa16.94■□□□□ 0.3
SHMT1-208ENST00000582352 AKNAQ7Z591 1439 aa16.94■□□□□ 0.3
SHMT1-208ENST00000582352 CHIC2Q9UKJ5 165 aa16.92■□□□□ 0.3
SHMT1-208ENST00000582352 EIF4G2P78344 907 aaKnown RBP eCLIP16.92■□□□□ 0.3
SHMT1-208ENST00000582352 CNTLNQ9NXG0 1405 aa16.91■□□□□ 0.3
SHMT1-208ENST00000582352 DENND4BO75064 1496 aaPredicted RBP16.9■□□□□ 0.3
SHMT1-208ENST00000582352 KDM6BO15054 1643 aa16.88■□□□□ 0.29
SHMT1-208ENST00000582352 CDK11AQ9UQ88 783 aaPredicted RBP16.88■□□□□ 0.29
SHMT1-208ENST00000582352 IRX6P78412 446 aaPredicted RBP16.88■□□□□ 0.29
SHMT1-208ENST00000582352 EPRSP07814 1512 aaKnown RBP16.86■□□□□ 0.29
SHMT1-208ENST00000582352 MIA2Q96PC5 1412 aa16.85■□□□□ 0.29
SHMT1-208ENST00000582352 MPHOSPH9Q99550 1183 aa16.84■□□□□ 0.29
SHMT1-208ENST00000582352 ERICH6BQ5W0A0 696 aa16.84■□□□□ 0.29
SHMT1-208ENST00000582352 IQGAP2Q13576 1575 aa16.83■□□□□ 0.29
SHMT1-208ENST00000582352 NCOA1Q15788 1441 aa16.83■□□□□ 0.28
SHMT1-208ENST00000582352 PDS5BQ9NTI5 1447 aa16.83■□□□□ 0.28
SHMT1-208ENST00000582352 CDK13Q14004 1512 aaKnown RBP16.82■□□□□ 0.28
SHMT1-208ENST00000582352 L3MBTL2Q969R5 705 aa16.82■□□□□ 0.28
SHMT1-208ENST00000582352 CCDC7Q96M83 1385 aa16.82■□□□□ 0.28
SHMT1-208ENST00000582352 FANCIQ9NVI1 1328 aa16.81■□□□□ 0.28
SHMT1-208ENST00000582352 PBRM1Q86U86 1689 aa16.8■□□□□ 0.28
SHMT1-208ENST00000582352 TARBP1Q13395 1621 aaKnown RBP16.8■□□□□ 0.28
SHMT1-208ENST00000582352 WDR62O43379 1518 aa16.8■□□□□ 0.28
SHMT1-208ENST00000582352 PRKRIP1Q9H875 184 aaPredicted RBP16.79■□□□□ 0.28
SHMT1-208ENST00000582352 PPP4R2Q9NY27 417 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms