RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 NISCHQ9Y2I1 1504 aa24.59■■□□□ 1.53
SHMT1-208ENST00000582352 SHROOM4Q9ULL8 1493 aa21.16■□□□□ 0.98
SHMT1-208ENST00000582352 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
SHMT1-208ENST00000582352 SUPT5HO00267 1087 aaKnown RBP20.87■□□□□ 0.93
SHMT1-208ENST00000582352 CCDC180Q9P1Z9 1646 aa20.84■□□□□ 0.93
SHMT1-208ENST00000582352 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
SHMT1-208ENST00000582352 CHIC1Q5VXU3 224 aa20.39■□□□□ 0.85
SHMT1-208ENST00000582352 DCAF8L2P0C7V8 631 aa20.3■□□□□ 0.84
SHMT1-208ENST00000582352 HRCP23327 699 aa20.25■□□□□ 0.83
SHMT1-208ENST00000582352 DCAF1Q9Y4B6 1507 aa20.18■□□□□ 0.82
SHMT1-208ENST00000582352 PCGF6Q9BYE7 350 aa20.06■□□□□ 0.8
SHMT1-208ENST00000582352 ABCC9O60706 1549 aa19.78■□□□□ 0.76
SHMT1-208ENST00000582352 LOC105371045A0A1W2PR82 267 aa19.78■□□□□ 0.76
SHMT1-208ENST00000582352 PPARGC1BQ86YN6 1023 aaKnown RBP19.75■□□□□ 0.75
SHMT1-208ENST00000582352 TRIM26Q12899 539 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-208ENST00000582352 SCRIBQ14160 1630 aa19.57■□□□□ 0.72
SHMT1-208ENST00000582352 RSF1Q96T23 1441 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-208ENST00000582352 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
SHMT1-208ENST00000582352 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
SHMT1-208ENST00000582352 ZEB1P37275 1124 aaPredicted RBP19.35■□□□□ 0.69
SHMT1-208ENST00000582352 FAM9AQ8IZU1 332 aaPredicted RBP19.27■□□□□ 0.67
SHMT1-208ENST00000582352 NACADO15069 1562 aa19.18■□□□□ 0.66
SHMT1-208ENST00000582352 CECR2Q9BXF3 1484 aa19.14■□□□□ 0.65
SHMT1-208ENST00000582352 MROH2BQ7Z745 1585 aa19.12■□□□□ 0.65
SHMT1-208ENST00000582352 EHMT2Q96KQ7 1210 aa19.1■□□□□ 0.65
SHMT1-208ENST00000582352 WIZO95785 1651 aa19.06■□□□□ 0.64
SHMT1-208ENST00000582352 BAZ1AQ9NRL2 1556 aaPredicted RBP19■□□□□ 0.63
SHMT1-208ENST00000582352 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
SHMT1-208ENST00000582352 PELP1Q8IZL8 1130 aaKnown RBP18.83■□□□□ 0.61
SHMT1-208ENST00000582352 SCAF1Q9H7N4 1312 aaKnown RBP18.81■□□□□ 0.6
SHMT1-208ENST00000582352 CCER1Q8TC90 406 aaPredicted RBP18.79■□□□□ 0.6
SHMT1-208ENST00000582352 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
SHMT1-208ENST00000582352 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.77■□□□□ 0.6
SHMT1-208ENST00000582352 ABCC8Q09428 1581 aa18.73■□□□□ 0.59
SHMT1-208ENST00000582352 WRNQ14191 1432 aaPredicted RBP eCLIP18.7■□□□□ 0.58
SHMT1-208ENST00000582352 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
SHMT1-208ENST00000582352 CCDC88BA6NC98 1476 aa18.69■□□□□ 0.58
SHMT1-208ENST00000582352 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
SHMT1-208ENST00000582352 CEP162Q5TB80 1403 aa18.67■□□□□ 0.58
SHMT1-208ENST00000582352 TNIKQ9UKE5 1360 aa18.59■□□□□ 0.57
SHMT1-208ENST00000582352 EEA1Q15075 1411 aa18.59■□□□□ 0.57
SHMT1-208ENST00000582352 TTBK1Q5TCY1 1321 aaPredicted RBP18.58■□□□□ 0.57
SHMT1-208ENST00000582352 SOGA1O94964 1423 aa18.58■□□□□ 0.57
SHMT1-208ENST00000582352 ACIN1Q9UKV3 1341 aaKnown RBP18.56■□□□□ 0.56
SHMT1-208ENST00000582352 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
SHMT1-208ENST00000582352 DIEXFQ68CQ4 756 aaKnown RBP18.55■□□□□ 0.56
SHMT1-208ENST00000582352 NEUROD1Q13562 356 aa18.49■□□□□ 0.55
SHMT1-208ENST00000582352 CSRNP3Q8WYN3 585 aa18.49■□□□□ 0.55
SHMT1-208ENST00000582352 CENPBP07199 599 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-208ENST00000582352 UBTFP17480 764 aaKnown RBP18.48■□□□□ 0.55
SHMT1-208ENST00000582352 GOLGA3Q08378 1498 aa18.48■□□□□ 0.55
SHMT1-208ENST00000582352 RUSC2Q8N2Y8 1516 aa18.45■□□□□ 0.54
SHMT1-208ENST00000582352 GTF3C3Q9Y5Q9 886 aa18.36■□□□□ 0.53
SHMT1-208ENST00000582352 CEP164Q9UPV0 1460 aa18.34■□□□□ 0.53
SHMT1-208ENST00000582352 ZNF316A6NFI3 1004 aaPredicted RBP18.33■□□□□ 0.53
SHMT1-208ENST00000582352 KIF21BO75037 1637 aa18.33■□□□□ 0.52
SHMT1-208ENST00000582352 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
SHMT1-208ENST00000582352 SYNJ1O43426 1573 aa18.29■□□□□ 0.52
SHMT1-208ENST00000582352 CLIP1P30622 1438 aa18.26■□□□□ 0.51
SHMT1-208ENST00000582352 BICRAQ9NZM4 1560 aa18.26■□□□□ 0.51
SHMT1-208ENST00000582352 PABPN1Q86U42 306 aaKnown RBP eCLIP18.23■□□□□ 0.51
SHMT1-208ENST00000582352 VPS8Q8N3P4 1428 aa18.22■□□□□ 0.51
SHMT1-208ENST00000582352 HNRNPUL2Q1KMD3 747 aaKnown RBP18.22■□□□□ 0.51
SHMT1-208ENST00000582352 BAZ1BQ9UIG0 1483 aaKnown RBP18.21■□□□□ 0.51
SHMT1-208ENST00000582352 APLP2Q06481 763 aa18.17■□□□□ 0.5
SHMT1-208ENST00000582352 YTHDC1Q96MU7 727 aaKnown RBP18.14■□□□□ 0.5
SHMT1-208ENST00000582352 RAPGEF2Q9Y4G8 1499 aa18.13■□□□□ 0.49
SHMT1-208ENST00000582352 ATAD2BQ9ULI0 1458 aa18.13■□□□□ 0.49
SHMT1-208ENST00000582352 MIER1Q8N108 512 aa18.08■□□□□ 0.48
SHMT1-208ENST00000582352 TOP2BQ02880 1626 aa18.05■□□□□ 0.48
SHMT1-208ENST00000582352 RANGAP1P46060 587 aaPredicted RBP18.03■□□□□ 0.48
SHMT1-208ENST00000582352 BIVM-ERCC5R4GMW8 1640 aa17.99■□□□□ 0.47
SHMT1-208ENST00000582352 ERICH3Q5RHP9 1530 aa17.99■□□□□ 0.47
SHMT1-208ENST00000582352 MYT1Q01538 1121 aa17.97■□□□□ 0.47
SHMT1-208ENST00000582352 CLSPNQ9HAW4 1339 aa17.96■□□□□ 0.47
SHMT1-208ENST00000582352 PRXQ9BXM0 1461 aa17.92■□□□□ 0.46
SHMT1-208ENST00000582352 ARAP1Q96P48 1450 aa17.92■□□□□ 0.46
SHMT1-208ENST00000582352 DHX57Q6P158 1386 aaKnown RBP17.9■□□□□ 0.46
SHMT1-208ENST00000582352 RRBP1Q9P2E9 1410 aaKnown RBP17.82■□□□□ 0.44
SHMT1-208ENST00000582352 KANK4Q5T7N3 995 aaPredicted RBP17.81■□□□□ 0.44
SHMT1-208ENST00000582352 KIF27Q86VH2 1401 aa17.8■□□□□ 0.44
SHMT1-208ENST00000582352 CUX1P39880 1505 aa17.8■□□□□ 0.44
SHMT1-208ENST00000582352 HMGXB3Q12766 1538 aa17.78■□□□□ 0.44
SHMT1-208ENST00000582352 CUX2O14529 1486 aa17.76■□□□□ 0.43
SHMT1-208ENST00000582352 CCNB3Q8WWL7 1395 aa17.74■□□□□ 0.43
SHMT1-208ENST00000582352 ARHGAP35Q9NRY4 1499 aa17.72■□□□□ 0.43
SHMT1-208ENST00000582352 NCAPD3P42695 1498 aa17.71■□□□□ 0.43
SHMT1-208ENST00000582352 CFTRP13569 1480 aa17.67■□□□□ 0.42
SHMT1-208ENST00000582352 ITGAEP38570 1179 aa17.64■□□□□ 0.41
SHMT1-208ENST00000582352 SUPT16HQ9Y5B9 1047 aaKnown RBP17.63■□□□□ 0.41
SHMT1-208ENST00000582352 TIAM1Q13009 1591 aa17.61■□□□□ 0.41
SHMT1-208ENST00000582352 PRDM2Q13029 1718 aa17.6■□□□□ 0.41
SHMT1-208ENST00000582352 RAB3GAP2Q9H2M9 1393 aa17.6■□□□□ 0.41
SHMT1-208ENST00000582352 MAP3K1Q13233 1512 aa17.59■□□□□ 0.41
SHMT1-208ENST00000582352 MAPKBP1O60336 1514 aa17.58■□□□□ 0.4
SHMT1-208ENST00000582352 IGF1RP08069 1367 aa17.53■□□□□ 0.4
SHMT1-208ENST00000582352 SETD5Q9C0A6 1442 aa17.53■□□□□ 0.4
SHMT1-208ENST00000582352 LRRC9Q6ZRR7 1453 aa17.52■□□□□ 0.4
SHMT1-208ENST00000582352 CARMIL1Q5VZK9 1371 aa17.49■□□□□ 0.39
SHMT1-208ENST00000582352 FHAD1B1AJZ9 1412 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms