RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 BIVM-ERCC5R4GMW8 1640 aa14.39□□□□□ -0.11
SNHG3-201ENST00000413987 PLEKHG5O94827 1062 aa14.39□□□□□ -0.11
SNHG3-201ENST00000413987 URB2Q14146 1524 aaKnown RBP14.38□□□□□ -0.11
SNHG3-201ENST00000413987 ERCC6Q03468 1493 aa14.35□□□□□ -0.11
SNHG3-201ENST00000413987 TOPBP1Q92547 1522 aa14.35□□□□□ -0.11
SNHG3-201ENST00000413987 FGD5Q6ZNL6 1462 aa14.34□□□□□ -0.11
SNHG3-201ENST00000413987 DNMBPQ6XZF7 1577 aa14.32□□□□□ -0.12
SNHG3-201ENST00000413987 ZEB1P37275 1124 aaPredicted RBP14.31□□□□□ -0.12
SNHG3-201ENST00000413987 RAD54L2Q9Y4B4 1467 aa14.31□□□□□ -0.12
SNHG3-201ENST00000413987 POLA1P09884 1462 aaPredicted RBP14.29□□□□□ -0.12
SNHG3-201ENST00000413987 MRC2Q9UBG0 1479 aa14.27□□□□□ -0.12
SNHG3-201ENST00000413987 FOXD4L1Q9NU39 408 aa14.26□□□□□ -0.13
SNHG3-201ENST00000413987 PPP4R3CPQ6ZMV5 832 aa14.24□□□□□ -0.13
SNHG3-201ENST00000413987 CUX2O14529 1486 aa14.23□□□□□ -0.13
SNHG3-201ENST00000413987 THOC2Q8NI27 1593 aaKnown RBP14.22□□□□□ -0.13
SNHG3-201ENST00000413987 WDR62O43379 1518 aa14.2□□□□□ -0.14
SNHG3-201ENST00000413987 NBR1Q14596 966 aa14.19□□□□□ -0.14
SNHG3-201ENST00000413987 SCAF1Q9H7N4 1312 aaKnown RBP14.18□□□□□ -0.14
SNHG3-201ENST00000413987 TDRD9Q8NDG6 1382 aaKnown RBP14.18□□□□□ -0.14
SNHG3-201ENST00000413987 KIF27Q86VH2 1401 aa14.17□□□□□ -0.14
SNHG3-201ENST00000413987 EEA1Q15075 1411 aa14.15□□□□□ -0.14
SNHG3-201ENST00000413987 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
SNHG3-201ENST00000413987 TARBP1Q13395 1621 aaKnown RBP14.14□□□□□ -0.15
SNHG3-201ENST00000413987 WDR97A6NE52 1622 aa14.13□□□□□ -0.15
SNHG3-201ENST00000413987 ZNF608Q9ULD9 1512 aaPredicted RBP14.12□□□□□ -0.15
SNHG3-201ENST00000413987 AQRO60306 1485 aaKnown RBP eCLIP14.11□□□□□ -0.156e-27■■■■■ 37.7
SNHG3-201ENST00000413987 RAPGEF2Q9Y4G8 1499 aa14.11□□□□□ -0.15
SNHG3-201ENST00000413987 IGF1RP08069 1367 aa14.1□□□□□ -0.15
SNHG3-201ENST00000413987 PAXIP1Q6ZW49 1069 aaPredicted RBP14.07□□□□□ -0.16
SNHG3-201ENST00000413987 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.07□□□□□ -0.16
SNHG3-201ENST00000413987 ABCA5Q8WWZ7 1642 aa14.06□□□□□ -0.16
SNHG3-201ENST00000413987 GAPVD1Q14C86 1478 aa14.06□□□□□ -0.16
SNHG3-201ENST00000413987 GOLGA3Q08378 1498 aa14.05□□□□□ -0.16
SNHG3-201ENST00000413987 IFT140Q96RY7 1462 aa14.05□□□□□ -0.16
SNHG3-201ENST00000413987 PRXQ9BXM0 1461 aa14.05□□□□□ -0.16
SNHG3-201ENST00000413987 KIF21BO75037 1637 aa14.04□□□□□ -0.16
SNHG3-201ENST00000413987 CFAP44Q96MT7 982 aa14.02□□□□□ -0.16
SNHG3-201ENST00000413987 PPP6R1Q9UPN7 881 aa14.02□□□□□ -0.16
SNHG3-201ENST00000413987 CARMIL1Q5VZK9 1371 aa14.02□□□□□ -0.17
SNHG3-201ENST00000413987 CDK11BP21127 795 aaKnown RBP14.01□□□□□ -0.17
SNHG3-201ENST00000413987 CDK11AQ9UQ88 783 aaPredicted RBP14.01□□□□□ -0.17
SNHG3-201ENST00000413987 EIF4G3O43432 1585 aaKnown RBP14.01□□□□□ -0.17
SNHG3-201ENST00000413987 CCDC9Q9Y3X0 531 aaKnown RBP14□□□□□ -0.17
SNHG3-201ENST00000413987 PBRM1Q86U86 1689 aa13.99□□□□□ -0.17
SNHG3-201ENST00000413987 SENP3Q9H4L4 574 aaPredicted RBP13.98□□□□□ -0.17
SNHG3-201ENST00000413987 PDIA4P13667 645 aaKnown RBP13.98□□□□□ -0.17
SNHG3-201ENST00000413987 TSHZ2Q9NRE2 1034 aa13.96□□□□□ -0.17
SNHG3-201ENST00000413987 BBXQ8WY36 941 aaPredicted RBP13.96□□□□□ -0.17
SNHG3-201ENST00000413987 TNIKQ9UKE5 1360 aa13.96□□□□□ -0.17
SNHG3-201ENST00000413987 ERICH3Q5RHP9 1530 aa13.96□□□□□ -0.18
SNHG3-201ENST00000413987 CHMP4AQ9BY43 222 aa13.95□□□□□ -0.18
SNHG3-201ENST00000413987 CEP162Q5TB80 1403 aa13.95□□□□□ -0.18
SNHG3-201ENST00000413987 GRIN2BQ13224 1484 aa13.94□□□□□ -0.18
SNHG3-201ENST00000413987 HMGB1P09429 215 aaKnown RBP13.94□□□□□ -0.18
SNHG3-201ENST00000413987 SNAPC4Q5SXM2 1469 aa13.93□□□□□ -0.18
SNHG3-201ENST00000413987 CNKSR2Q8WXI2 1034 aa13.93□□□□□ -0.18
SNHG3-201ENST00000413987 CUL7Q14999 1698 aa13.92□□□□□ -0.18
SNHG3-201ENST00000413987 ACIN1Q9UKV3 1341 aaKnown RBP13.92□□□□□ -0.18
SNHG3-201ENST00000413987 ADAMTS12P58397 1594 aa13.9□□□□□ -0.18
SNHG3-201ENST00000413987 IGSF3O75054 1194 aa13.87□□□□□ -0.19
SNHG3-201ENST00000413987 FHAD1B1AJZ9 1412 aa13.86□□□□□ -0.19
SNHG3-201ENST00000413987 CLIP1P30622 1438 aa13.86□□□□□ -0.19
SNHG3-201ENST00000413987 HSP90B1P14625 803 aaKnown RBP13.85□□□□□ -0.19
SNHG3-201ENST00000413987 SAMD1Q6SPF0 538 aaPredicted RBP13.85□□□□□ -0.19
SNHG3-201ENST00000413987 P3H3Q8IVL6 736 aa13.83□□□□□ -0.2
SNHG3-201ENST00000413987 CHMP7Q8WUX9 453 aaPredicted RBP13.83□□□□□ -0.2
SNHG3-201ENST00000413987 CENPBP07199 599 aaPredicted RBP13.82□□□□□ -0.2
SNHG3-201ENST00000413987 MAGI1Q96QZ7 1491 aaPredicted RBP13.81□□□□□ -0.2
SNHG3-201ENST00000413987 UBE2Q2Q8WVN8 375 aa13.8□□□□□ -0.2
SNHG3-201ENST00000413987 GRIN2AQ12879 1464 aa13.8□□□□□ -0.2
SNHG3-201ENST00000413987 CTTNBP2Q8WZ74 1663 aa13.79□□□□□ -0.2
SNHG3-201ENST00000413987 SYNJ2O15056 1496 aa13.79□□□□□ -0.2
SNHG3-201ENST00000413987 ZBTB7CA1YPR0 619 aa13.78□□□□□ -0.2
SNHG3-201ENST00000413987 PKD2Q13563 968 aa13.78□□□□□ -0.2
SNHG3-201ENST00000413987 ARAP1Q96P48 1450 aa13.78□□□□□ -0.2
SNHG3-201ENST00000413987 ARHGAP35Q9NRY4 1499 aa13.78□□□□□ -0.2
SNHG3-201ENST00000413987 NPM1P06748 294 aaKnown RBP eCLIP13.77□□□□□ -0.21
SNHG3-201ENST00000413987 NEUROD1Q13562 356 aa13.76□□□□□ -0.21
SNHG3-201ENST00000413987 CEP170Q5SW79 1584 aa13.75□□□□□ -0.21
SNHG3-201ENST00000413987 CHD1O14646 1710 aa13.74□□□□□ -0.21
SNHG3-201ENST00000413987 DNAJC5Q9H3Z4 198 aa13.74□□□□□ -0.21
SNHG3-201ENST00000413987 FHOD3Q2V2M9 1422 aa13.73□□□□□ -0.21
SNHG3-201ENST00000413987 BCL11AQ9H165 835 aa13.72□□□□□ -0.21
SNHG3-201ENST00000413987 BRD2P25440 801 aaKnown RBP13.72□□□□□ -0.21
SNHG3-201ENST00000413987 IQGAP2Q13576 1575 aa13.71□□□□□ -0.22
SNHG3-201ENST00000413987 SPRYD3Q8NCJ5 442 aa13.71□□□□□ -0.22
SNHG3-201ENST00000413987 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
SNHG3-201ENST00000413987 NUP160Q12769 1436 aa13.67□□□□□ -0.22
SNHG3-201ENST00000413987 ARID3AQ99856 593 aa13.67□□□□□ -0.22
SNHG3-201ENST00000413987 KIAA0586Q9BVV6 1533 aa13.67□□□□□ -0.22
SNHG3-201ENST00000413987 PUS7Q96PZ0 661 aaKnown RBP13.67□□□□□ -0.22
SNHG3-201ENST00000413987 ATP1B4Q9UN42 357 aaPredicted RBP13.64□□□□□ -0.23
SNHG3-201ENST00000413987 SAMD9Q5K651 1589 aa13.64□□□□□ -0.23
SNHG3-201ENST00000413987 BRPF1P55201 1214 aaPredicted RBP13.62□□□□□ -0.23
SNHG3-201ENST00000413987 DHX37Q8IY37 1157 aaKnown RBP13.62□□□□□ -0.23
SNHG3-201ENST00000413987 EFCAB5A4FU69 1503 aa13.62□□□□□ -0.23
SNHG3-201ENST00000413987 DISP1Q96F81 1524 aa13.62□□□□□ -0.23
SNHG3-201ENST00000413987 DIEXFQ68CQ4 756 aaKnown RBP13.62□□□□□ -0.23
SNHG3-201ENST00000413987 JPH4Q96JJ6 628 aa13.62□□□□□ -0.23
SNHG3-201ENST00000413987 NECTIN2Q92692 538 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms