RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 NISCHQ9Y2I1 1504 aa19.96■□□□□ 0.79
SNHG3-201ENST00000413987 SLC24A1O60721 1099 aa18.92■□□□□ 0.62
SNHG3-201ENST00000413987 CHIC1Q5VXU3 224 aa18.45■□□□□ 0.54
SNHG3-201ENST00000413987 EHMT2Q96KQ7 1210 aa17.7■□□□□ 0.42
SNHG3-201ENST00000413987 CCDC180Q9P1Z9 1646 aa17.38■□□□□ 0.37
SNHG3-201ENST00000413987 PLPPR3Q6T4P5 718 aa17.11■□□□□ 0.33
SNHG3-201ENST00000413987 DAXXQ9UER7 740 aaPredicted RBP17.11■□□□□ 0.33
SNHG3-201ENST00000413987 AEBP2Q6ZN18 517 aaPredicted RBP17.08■□□□□ 0.32
SNHG3-201ENST00000413987 RTN4Q9NQC3 1192 aaKnown RBP17.06■□□□□ 0.32
SNHG3-201ENST00000413987 NCBP3Q53F19 620 aaKnown RBP16.93■□□□□ 0.3
SNHG3-201ENST00000413987 AMER1Q5JTC6 1135 aaPredicted RBP16.83■□□□□ 0.28
SNHG3-201ENST00000413987 ABCC9O60706 1549 aa16.78■□□□□ 0.28
SNHG3-201ENST00000413987 DCAF8L2P0C7V8 631 aa16.74■□□□□ 0.27
SNHG3-201ENST00000413987 ZCCHC6Q5VYS8 1495 aaKnown RBP16.74■□□□□ 0.27
SNHG3-201ENST00000413987 PHF23Q9BUL5 403 aaPredicted RBP16.57■□□□□ 0.24
SNHG3-201ENST00000413987 KCNA4P22459 653 aa16.52■□□□□ 0.24
SNHG3-201ENST00000413987 CSRNP3Q8WYN3 585 aa16.52■□□□□ 0.24
SNHG3-201ENST00000413987 SHROOM4Q9ULL8 1493 aa16.44■□□□□ 0.22
SNHG3-201ENST00000413987 DCAF1Q9Y4B6 1507 aa16.38■□□□□ 0.21
SNHG3-201ENST00000413987 TTBK1Q5TCY1 1321 aaPredicted RBP16.27■□□□□ 0.2
SNHG3-201ENST00000413987 PRKCSHP14314 528 aaPredicted RBP16.26■□□□□ 0.19
SNHG3-201ENST00000413987 ARXQ96QS3 562 aa16.25■□□□□ 0.19
SNHG3-201ENST00000413987 NACADO15069 1562 aa16.23■□□□□ 0.19
SNHG3-201ENST00000413987 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
SNHG3-201ENST00000413987 SCRIBQ14160 1630 aa16.16■□□□□ 0.18
SNHG3-201ENST00000413987 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
SNHG3-201ENST00000413987 MYT1Q01538 1121 aa16.1■□□□□ 0.17
SNHG3-201ENST00000413987 PELP1Q8IZL8 1130 aaKnown RBP16.1■□□□□ 0.17
SNHG3-201ENST00000413987 APLP2Q06481 763 aa16.07■□□□□ 0.16
SNHG3-201ENST00000413987 TIMELESSQ9UNS1 1208 aa15.96■□□□□ 0.15
SNHG3-201ENST00000413987 UNC13AQ9UPW8 1703 aa15.92■□□□□ 0.14
SNHG3-201ENST00000413987 ERICH6Q7L0X2 663 aa15.91■□□□□ 0.14
SNHG3-201ENST00000413987 TAOK2Q9UL54 1235 aa15.86■□□□□ 0.13
SNHG3-201ENST00000413987 PABPN1Q86U42 306 aaKnown RBP eCLIP15.86■□□□□ 0.13
SNHG3-201ENST00000413987 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
SNHG3-201ENST00000413987 TULP1O00294 542 aaPredicted RBP15.75■□□□□ 0.11
SNHG3-201ENST00000413987 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
SNHG3-201ENST00000413987 BCANQ96GW7 911 aa15.74■□□□□ 0.11
SNHG3-201ENST00000413987 SLC4A1APQ9BWU0 796 aaKnown RBP15.74■□□□□ 0.11
SNHG3-201ENST00000413987 SUPT5HO00267 1087 aaKnown RBP15.7■□□□□ 0.1
SNHG3-201ENST00000413987 HOMEZQ8IX15 550 aa15.7■□□□□ 0.1
SNHG3-201ENST00000413987 CECR2Q9BXF3 1484 aa15.64■□□□□ 0.09
SNHG3-201ENST00000413987 TPRNQ4KMQ1 711 aa15.56■□□□□ 0.08
SNHG3-201ENST00000413987 MROH2BQ7Z745 1585 aa15.49■□□□□ 0.07
SNHG3-201ENST00000413987 RSF1Q96T23 1441 aaPredicted RBP15.48■□□□□ 0.07
SNHG3-201ENST00000413987 PLCB2Q00722 1185 aa15.45■□□□□ 0.06
SNHG3-201ENST00000413987 BAZ1AQ9NRL2 1556 aaPredicted RBP15.4■□□□□ 0.06
SNHG3-201ENST00000413987 SMARCA4P51532 1647 aa15.39■□□□□ 0.05
SNHG3-201ENST00000413987 WIZO95785 1651 aa15.38■□□□□ 0.05
SNHG3-201ENST00000413987 GTF3C3Q9Y5Q9 886 aa15.34■□□□□ 0.05
SNHG3-201ENST00000413987 PODXL2Q9NZ53 605 aa15.31■□□□□ 0.04
SNHG3-201ENST00000413987 EIF4G1Q04637 1599 aaKnown RBP15.28■□□□□ 0.04
SNHG3-201ENST00000413987 HAP1P54257 671 aaPredicted RBP15.26■□□□□ 0.03
SNHG3-201ENST00000413987 KLHL34Q8N239 644 aa15.26■□□□□ 0.03
SNHG3-201ENST00000413987 ATAD2BQ9ULI0 1458 aa15.18■□□□□ 0.02
SNHG3-201ENST00000413987 PEG3Q9GZU2 1588 aa15.13■□□□□ 0.01
SNHG3-201ENST00000413987 CC2D2AQ9P2K1 1620 aa15.12■□□□□ 0.01
SNHG3-201ENST00000413987 TOP2AP11388 1531 aaKnown RBP15.12■□□□□ 0.01
SNHG3-201ENST00000413987 SMARCA2P51531 1590 aa15.09■□□□□ 0.01
SNHG3-201ENST00000413987 BAZ1BQ9UIG0 1483 aaKnown RBP15.09■□□□□ 0.01
SNHG3-201ENST00000413987 EIF5BO60841 1220 aaKnown RBP15.08■□□□□ 0
SNHG3-201ENST00000413987 ZBTB22O15209 634 aa15.05■□□□□ -0
SNHG3-201ENST00000413987 HRCP23327 699 aa15.05■□□□□ -0
SNHG3-201ENST00000413987 CCDC88BA6NC98 1476 aa15.02□□□□□ -0.01
SNHG3-201ENST00000413987 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
SNHG3-201ENST00000413987 VSIG10Q8N0Z9 540 aa15□□□□□ -0.01
SNHG3-201ENST00000413987 DNAJC5BQ9UF47 199 aa14.99□□□□□ -0.01
SNHG3-201ENST00000413987 NPM2Q86SE8 214 aaKnown RBP14.98□□□□□ -0.01
SNHG3-201ENST00000413987 TMEM132AQ24JP5 1023 aa14.98□□□□□ -0.01
SNHG3-201ENST00000413987 HMGXB3Q12766 1538 aa14.96□□□□□ -0.01
SNHG3-201ENST00000413987 ADRA2BP18089 450 aa14.94□□□□□ -0.02
SNHG3-201ENST00000413987 C14orf37Q86TY3 774 aa14.88□□□□□ -0.03
SNHG3-201ENST00000413987 FBXO3Q9UK99 471 aa14.85□□□□□ -0.03
SNHG3-201ENST00000413987 FKBP8Q14318 412 aa14.79□□□□□ -0.04
SNHG3-201ENST00000413987 ABCC8Q09428 1581 aa14.75□□□□□ -0.05
SNHG3-201ENST00000413987 NESP48681 1621 aa14.71□□□□□ -0.05
SNHG3-201ENST00000413987 KDM2AQ9Y2K7 1162 aa14.7□□□□□ -0.06
SNHG3-201ENST00000413987 CFTRP13569 1480 aa14.67□□□□□ -0.06
SNHG3-201ENST00000413987 TRIM41Q8WV44 630 aa14.67□□□□□ -0.06
SNHG3-201ENST00000413987 CADPSQ9ULU8 1353 aa14.65□□□□□ -0.06
SNHG3-201ENST00000413987 TRIM26Q12899 539 aaPredicted RBP14.63□□□□□ -0.07
SNHG3-201ENST00000413987 PCGF6Q9BYE7 350 aa14.58□□□□□ -0.08
SNHG3-201ENST00000413987 WRNQ14191 1432 aaPredicted RBP eCLIP14.56□□□□□ -0.08
SNHG3-201ENST00000413987 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
SNHG3-201ENST00000413987 NPM3O75607 178 aaKnown RBP14.54□□□□□ -0.08
SNHG3-201ENST00000413987 FAM9AQ8IZU1 332 aaPredicted RBP14.54□□□□□ -0.08
SNHG3-201ENST00000413987 FBLN2P98095 1184 aa14.53□□□□□ -0.08
SNHG3-201ENST00000413987 PRDM2Q13029 1718 aa14.53□□□□□ -0.08
SNHG3-201ENST00000413987 FANCD2Q9BXW9 1451 aa14.53□□□□□ -0.08
SNHG3-201ENST00000413987 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
SNHG3-201ENST00000413987 PPARGC1BQ86YN6 1023 aaKnown RBP14.5□□□□□ -0.09
SNHG3-201ENST00000413987 CUX1P39880 1505 aa14.48□□□□□ -0.09
SNHG3-201ENST00000413987 KIF21AQ7Z4S6 1674 aa14.47□□□□□ -0.09
SNHG3-201ENST00000413987 CEP164Q9UPV0 1460 aa14.43□□□□□ -0.1
SNHG3-201ENST00000413987 TOP2BQ02880 1626 aa14.43□□□□□ -0.1
SNHG3-201ENST00000413987 SOGA1O94964 1423 aa14.43□□□□□ -0.1
SNHG3-201ENST00000413987 UBTFP17480 764 aaKnown RBP14.42□□□□□ -0.1
SNHG3-201ENST00000413987 PDS5BQ9NTI5 1447 aa14.42□□□□□ -0.1
SNHG3-201ENST00000413987 RUSC2Q8N2Y8 1516 aa14.41□□□□□ -0.1
SNHG3-201ENST00000413987 LOC105371045A0A1W2PR82 267 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms